RNA id: XR_006247884.1



Basic Information


Item Value
RNA id XR_006247884.1
length 875
RNA type transcript
GC content 0.40
exon number 5
gene id si:dkey-93l1.9
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11799922 ~ 11801632 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATTAGcaattatcttttctttttttttttaataataaagactCTCTTTCTagaaaaacaatgtgtttttattttatagatggTTAACATTTGTGTGAACATAAGAACGAAAGTTTAAAAGCCTAAAGTCTGTTCACACATTGGTGACACTTATGGGAGTGTCTTTCTCGCAATGTTTAAAAGCACATCCTTTGGGGAGAGTCAGGAGTTTTAGCGTAGAACACTTCTCAGGCTGAGCTGTAGTGTTTGTGAGCCTCCTGTAAACGTTTCTAAAGAAAATGGAGAATCAAGACCATAATCAAAGCAGAGAGGCTCCTGGTACAGGGAACACCCAGCGACCCTTCAACATGAATCATTACGCTACTAAGAAGAGTGCGGCGCAGAGCATGCTGGATGTGGCTCTTCTGATGGCGAACTCCTCTCAGCTGAAGTCCGTGCTTCATTCAGGAGCGCAGCACCGCTTCTACGTTCCTCTCCTCGCTCTGATCTCACTCTCCATCTCACTGCAGGTCATCGTAGGCCTCCTGCTCATCTTCATCGTGAAGTATGACCTGAATGACGTAAAGAAACAGATGAGGCTCAACACAATGAATAATGTGGCCACTGTTTTTGTGTTCTTCACTGTTCTTATCAACATCATCATAACAGCACTGGGGTTTGAGTCTGGAGGaagCAGCATCTGATATTACagttcttcagaaaaatatatttaaggaCTGCTCACACATTGTTGGTACCATTGACTAGCCTAAACATACCAGATGTATTTACACATGTGGAACCAATACTGCTAAAAACCTGAAGAAACTCTACTTTtaatgtttggtttgttttgttcctTGGTCGAAGGATTTaacaatcaataaaaacatgaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232453 lncRNA downstream 17556 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 36899 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 259877 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 423234 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 446094 11353159 ~ 11353828 (-) True G156785
TU232469 lncRNA upstream 253614 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 259815 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 259815 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 297335 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 349728 12151360 ~ 12156300 (-) True G157035
XM_043224295.1 mRNA downstream 53335 11744720 ~ 11746587 (-) False LOC122328546
XM_043224297.1 mRNA downstream 62337 11736897 ~ 11737585 (-) True LOC122328548
XM_043224292.1 mRNA downstream 64976 11732231 ~ 11734946 (-) True ognb
XM_043224286.1 mRNA downstream 116515 11657491 ~ 11683407 (-) True dnah12
XM_043224283.1 mRNA downstream 143319 11651399 ~ 11656603 (-) True asb14b
XM_043225314.1 mRNA upstream 146 11801778 ~ 11805140 (-) True haus7
XM_043225318.1 mRNA upstream 4724 11806356 ~ 11807389 (-) True LOC122329113
XM_043224701.1 mRNA upstream 7137 11808769 ~ 11857968 (-) True atp2b3b
XM_043224698.1 mRNA upstream 7137 11808769 ~ 11857967 (-) False atp2b3b
XM_043224697.1 mRNA upstream 7137 11808769 ~ 11857967 (-) False atp2b3b
TU232410 other downstream 53302 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other downstream 53302 11741400 ~ 11746620 (-) True LOC122328546
TU232418 other downstream 53302 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 54527 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 57119 11742670 ~ 11742803 (-) True LOC122329333
TU232479 other upstream 121212 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1339446 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1478624 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2525334 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2779462 14581094 ~ 14589593 (-) True fitm2

Expression Profile