RNA id: XM_043225338.1


Basic Information

Item Value
RNA id XM_043225338.1
length 2269
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC122329128
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14717745 ~ 14724225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGcacaaACCGGCACTCTTACAGAGGAGGGTCTAGATGTGTGGGGCGTGATGGAAGTGAGTGGAGCAGTATTTAGTGAGTTGGTCCCTGACCCTCTTTTTCTCCCTCCTGGACTGATGCTCTCTGCACTTGCCTCCTGCCATTGTTTGGCTTTGCTGGGGGGTCAAGCGCTCGGAGACCCACTGGAGCTCAAAATGATAGAATCTACTGGATGGGAACTGACAGAGCCAGAGAATGAGATGGCACTTGATTCTGAATTTGGCAAACACAGAGCGCTAGCAGTGATGAGACCTCCTGCATCTGACCTCCTGTCACAAGGAAATTCTGTCAGTCAGCCAGTGGCGATCATACGGCGATTCCCATTTTCCTCTTCTTTGCAAAGGATGAGTGTTGTGACCGTGGGTCCAGGTGGAGCGTCTCCTGTGGCGTTCCTTAAAGGAGCACCTGAAATAGTTGCCAGCTTGTGCCTTAGAGAAAGTGTGCCATCTCATTTTTCACCCATTCTCCGGGAGTATGCCAGCCAGGGCTTCAGGGTACTTGGATTTGCCTACAAGCATCTCACTAAGGAGACTAACCTAAGCACTGTCGAAAGGGTGGAGGTGGAGAAAAACATGAGCTTCCTGGGCCTGTTAGTAATGAAGAACCAGGTGAAGCCAGAGAGCGCAGAAGTCATTCGCACACTTAAACTGGCACAATTACGGCCTGTTATGGTTACAGGTGACAATATTCTCACGGCTGTGAATGTAGCACGTGCGTGTGGAATGGTGCCGTCACATGAGAAGGTTATTTTTGTTCACGCATCGCCCCCTACCGCCAGTCCAATGGCCTCGCTGCAGTTTCATCAAGGAGATGGTGCAGTAACCACCATTAATACTCAGGAGGCTATTGATATTCCAGCGCAGGATCTCTACCAAAACGGTGCCGGCTATCATTTGGCTATAAATGGAATGTCCTTTGCAGCACTTTGTGATCATTTCCCTGAATATCTGCCCAAGATTCTGATGAGGGGAACCGTGTACGCCCGCATGACCCCAGACCAGAAAACCCAGCTGGTCAAAGCACTGCAGAAACTCAAGGTGGGCATGTGTGGCGATGGAGCCAATGACTGCGGAGCACTGAGGGCCGCTGATGTGGGTGTGTCGTTGTCTGAGGCTGAGGCGTCTGTGGCGTCTCCTTTCACATCCAAGTCTAACAACATTAGCTGCGTGCCTCTACTCATCAAgGAAGGCAGGTGTTCACTGGTGACATCATTCAGTCTTTTCAAGTACATGGCTTTGTACAGCCTGATCCAGTTTGCCTCTGTACTTATTCTCTACACTGAGAAAACAAACTTGGGAGACTTGCAGTTCCTCTTCTTTGATTTGGTTTTGGTGACCGTTTTGGCTATAGTGATGGGACGGGGAGGTCCCAGCGATGAGCTCCACCCCCGGCGACCCGCTGCCAGTCTTCTGTCTCTCCCAGTCCTGTCTACTTTACTGCTGCACACCGTGCTGCTGATCCTAGCCCAGGTGTCTGCCCTGCTTATCACTGTATCACAAGACTGGTATGTGCCTCTAAATTCCACTGTGACGGGGGCTGCGAACTTGCCCAACATGGAGGACACAAGCGTATTTGCCTTATCGGGATTCCAGTACATCATCATGTCTGTTGTGATAACCAAAGGATATCCTTACAAAAAACCACTGTATTACAATTTTTTGTTTGTAGGTGCTCTGCTGGTCTTCTTTGCGCTTATGAGCTGGCTGGTCCTTTTTCGTCACACCATCATCCATCAAGTCCTGCAGCTCTATGACATCAACGATATGAAGTATAAACTGTTGCTGGTGGCTGTAGCTGCGCTCAACTTCTTCATATGCTACATGCTCGAGTTTCTTATTGACCAAGGAGCCCTGAACTGCCTTCGCAACCCCAGAGGAAAACGCAAGTCCAAAAAGCAGTACAAACGCTTGGACGTAGAGCTCGCAGAAACGCCCTCATGGCCGCCTCTAAACCAACCCTTGTTTCCAACACAGTGCTCCGTCATCGGTGTTAGCTAACACCTACCTCCTGCTTTACAATTTCAGCTCTTCCGAATCAAATATCCAGGGTTGCCAAAGATCTGATACCACCTCTCGGTGCACTAGTGAGGTATGAGTAGCAGGTGTTGTCCTTGTCTGCCTATTATATATGGCACAAAACTCATCATGCAGCATTAAGAATGAACTGTTTGTGATGGTATTTctaatataaaacatgaatgaagAATAAAAACCTTGAAGTATTTTGAAA

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process
GO:0006812 cation transport biological_process
GO:0009790 embryo development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233962 lncRNA downstream 15633 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA downstream 15633 14684890 ~ 14702112 (-) False LOC122328902
TU233980 lncRNA downstream 26430 14684890 ~ 14691315 (-) True LOC122328902
TU233838 lncRNA downstream 256728 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 274294 14383738 ~ 14443451 (-) True G157928
XR_006247854.1 lncRNA upstream 106039 14830264 ~ 14830849 (-) True LOC122328920
TU234007 lncRNA upstream 112136 14836361 ~ 14845678 (-) True G157999
TU234018 lncRNA upstream 322948 15047173 ~ 15048287 (-) False LOC122328913
TU233960 lncRNA upstream 439576 15163801 ~ 15301682 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 463923 15188148 ~ 15189638 (-) True LOC122328921
XM_043224382.1 mRNA downstream 38514 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA downstream 38515 14672277 ~ 14679230 (-) False gdi1
XM_043224565.1 mRNA downstream 81420 14624253 ~ 14636325 (-) True ada
XM_043224258.1 mRNA downstream 128123 14570347 ~ 14589622 (-) False fitm2
XM_043224257.1 mRNA downstream 138180 14570347 ~ 14579565 (-) False fitm2
XM_043225000.1 mRNA upstream 47866 14772091 ~ 14808777 (-) True LOC122328919
XM_043224968.1 mRNA upstream 181611 14905836 ~ 14933006 (-) True LOC122328901
XM_043224996.1 mRNA upstream 322927 15047152 ~ 15048344 (-) True LOC122328913
XM_043224998.1 mRNA upstream 325141 15049366 ~ 15073882 (-) True LOC122328916
XM_043224990.1 mRNA upstream 354361 15078586 ~ 15092247 (-) True LOC122328908
TU233895 other downstream 128152 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 386961 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1435418 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1500337 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2793095 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 623192 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 975044 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 975044 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1283881 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1419608 16143833 ~ 16169834 (-) True G158288

Expression Profile