RNA id: XM_043225340.1


Basic Information

Item Value
RNA id XM_043225340.1
length 1730
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC122329135
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11100072 ~ 11105175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGCTtcagattaaaatTAGCAGTTTCTTGACTGATACAGTCTTCACATTATGATGACCAAATTCATTTTTCTAGCTGGTGTTTCCCTGGCTTTGTTTCACTTTggatGGGCCTCTCAGCTGGCATGCTACTACACAAACTGGTCTCAGTACAGACCTGGCAATGTCAAATACATGCCAGAAAATGTGGATCCATATCTGTGCACtcatttaatttatgctttttcCATTATAAGTAACACAAACGAGCTGAGCACTTTTGAATGGAATGATGAATCTCTCTACAAATCTTTCAATGGACTAAAGGAAAAAAATCCTGGCTTGAAAACTCTCTTGGCCGTAGGAGGATGGAACTTTGGCACAGAACGGTTTAGTATCGTGGTGTCTACATCAGAAAACAGGCAGACGTTTATTCAGTCCTCCATCCCATTTCTGAGGAGACATGGCTTCGATGGTCTGGATCTGGACTGGGAGTATCCAGGTTCCCGTGGGAGTCCCCCTGAAGACAAGCAAAGATTCACTCTTCTCTGTAAgGAGCTCTTGGAAGCTTTCGAGGCAGAGAGCTCTGCCACCGGACGCCCCAGACTCATGCTCACTGCTGCAGTGAGCGCTGGGAAAGGAACCATTGATGCTGGTTATGAAATTGCAGAAATTGCCAAGTATTTGGACTTCATTAATGTGATGGCCTATGACTTCCACGGATCGTGGGAAAGTGTCACCGGTCACAGCAGTCCTCTGTACCATGACTCTGGAAACCCAGGGGATAATTACACTACTGATTTTGCAATGACATACTGGAGAGATCAGGGAGCGCCTTTGGAGAAGCTGAGGATGGGTTTTGCAGCATACGGAAGAACCTTTCGCCTGTCTTCACTGGATGGAGCCAGTGGAGCTGGAGCTTCAGCTAGTGGTCCTGCATCAGCTGGAATACACACCAGAGAGGCCGGATTCTGGTCCTATTATGAGGTTTGTGCTTTTCTTCAAGGAACCTCAGTGAAATGGATTGACGATCAGAAAGTTCCTTATGCAACAAAAGAATATGAATGGGTGGGATTTGACAACAAGGAAAGCTTTCAGACTAAGGTGAACTACCTAAAAGAGAAGAGGTTTGGAGGAGCTTTCGTCTGGGCTCTGGATCTTGATGACTTTACAGGACAGTTCTGTGAGCAGGGCAAATACCCTCTCATCAGACATCTCAGTACACTTCTTAATATAGATTTCCCTCCTGTTTCTTCAAATACAACACATGAGCCTGATGAGAACACAACAACAGCATCCACTACTGTAGTATCTCATGCCACAAGACCTCACGTTGTCCCCACAGTCCTCTCAGACTTCTGCGTTGGCAAAACGGATGGGATATACGTAAACCCAAATGAGACTACTTCCTTCATTCAGTGTTCTAATAACAAGCTCCATAAACAGAACTGTCCTGTTGGGACTGTCTTTAATCCCAACTGCTCGTGCTGTGACTGGCCTAAGAATTAACCTCATGCTATCACTGTTCTACTCCTGCGAGGGAAACGTAAAGAACTTTGGCAGTTTTTTGCTATATTGTTTTGTGACAGTAATGGCATAATCATTTCACACTTTACCtttatgtttttctatttttaataaacagctaTGATATAATGCTACCTTCATGAAATAATAACAACCTTCATTTTGTTGTGACTTAAAAAGTAAGCACGGTCCAACAtgcctaattaaaaaaacctgaTAAGCA

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231864 lncRNA upstream 14468 11083788 ~ 11085604 (+) False LOC122328437
TU231865 lncRNA upstream 21397 11077362 ~ 11078675 (+) False LOC122328437
TU231851 lncRNA upstream 64577 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 179667 10913904 ~ 10920405 (+) False G156497
TU231766 lncRNA upstream 198249 10897004 ~ 10901823 (+) False G156496
TU231887 lncRNA downstream 18917 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 43688 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 105866 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 113860 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA downstream 140376 11245551 ~ 11311487 (+) True G156599
XM_043224013.1 mRNA upstream 1530 11085866 ~ 11098542 (+) True nfascb
XM_043224012.1 mRNA upstream 1530 11087801 ~ 11098542 (+) False nfascb
XM_043224014.1 mRNA upstream 1530 11087801 ~ 11098542 (+) False nfascb
XM_043224015.1 mRNA upstream 1530 11087801 ~ 11098542 (+) False nfascb
XM_043224016.1 mRNA upstream 1530 11087801 ~ 11098542 (+) False nfascb
XM_043224114.1 mRNA downstream 36304 11141479 ~ 11147587 (+) True mfsd4ab
XM_043225377.1 mRNA downstream 50647 11155822 ~ 11161895 (+) False LOC122329179
XM_043225378.1 mRNA downstream 50664 11155839 ~ 11161895 (+) False LOC122329179
XM_043225376.1 mRNA downstream 50736 11155911 ~ 11161895 (+) True LOC122329179
XM_043225296.1 mRNA downstream 59467 11164642 ~ 11168458 (+) True LOC122329091
XR_006247905.1 other upstream 24335 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 24906 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 176084 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 197932 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 399177 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 69246 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 407450 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 408598 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 410624 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 413290 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile