RNA id: XM_043225341.1


Basic Information

Item Value
RNA id XM_043225341.1
length 1143
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC122329136
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 258605 ~ 266032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATATAATCCATggattaccatttgatgagatttatgaagTGGGAGATGAGCTTGGACAAGGAAGCTTTGGCACGGTGTACGAGGGGACTTCAAAATTCAACGCAAGgcaggttgccatcaaaatcATCCTCAAGTGTGAAAGAGACCGTTATATTGAACTAcctggctgttcaaagccactgtttgcagaagtggctgcAAACCTGCTGCTGAAACAGGCTCCATTAAGCCCCTACATTGTGTACATGCTGGAATggtttgaagaggaggatcggttcatcctcatcctggaaCATCCGGAACCCTGCATGGACTTGCTCAGATTTGTGGTTCACAACATGCATTGGCCGAACGAATTACAGACACGTAGCCTGATGTATCAAGCGGTGCTCGGGGCCAAGCACTGTCTTGACCGAGGTGTCTTTCACCGGGACATTAAGTTGAATAACTTTCTGATCAACACGACGACTAACCGAGTCcaactaatagactttggctgcagTGACCTCGTCAAAAGTACAGGCTACTTGGGTGGTTTTATAGGACGATTCTGCCCGCCTGAATACTACAAGGGCTTAGGATACAAGGCAGAGCCAACAACCGTCTGGTCTCTGGGTGTAATGATGTACGCAATTATGTGCAAATGTCTGCCCTTTAGCagtcctgaagacatgatgcatggaagtctgagttttaacgttagagtatccacagaattgcagaatttgataagtcgctgcctgactgttgacccaactaagagagcgactattgaggagatcctacagcataaatggtttTTTGAACATGAAATCGAATGGTACTTTCTACCTCTAAGCTTCAACAAAGCTCAACTTGCCGCATGGAGCCAATGTGATCCTAAAGACTTTGCAGGAGTTGATGttgatgctgatatttttgatgagcttgtgagaaCATCTAAGGTGTCCTTCAGACTTTTAGACGGTGATAAAGCCGGTAAGATGCTGGTAAACATCCTTGTGGCTGATATGGTAGAGAAGTATGGATACTGTCTAATGACAAGAGATGAATTCATCTCAACCCTCTCAGTTGTCACTCTGAGAGATCCCGCTGCTTATAAGGAGTCTGTGCAGTTCTTGGAAAGACACCTGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227602 lncRNA upstream 1884 267916 ~ 268181 (-) True G153749
TU227603 lncRNA upstream 10136 276168 ~ 276808 (-) True G153750
XR_006247796.1 lncRNA upstream 54241 320273 ~ 320626 (-) True LOC122328463
TU227606 lncRNA upstream 95617 361649 ~ 363238 (-) False G153753
TU227608 lncRNA upstream 95617 361649 ~ 362606 (-) True G153753
XM_043225342.1 mRNA upstream 42331 308363 ~ 310577 (-) True LOC122329137
XM_043224276.1 mRNA upstream 513996 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 542892 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 542892 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 599683 865715 ~ 871569 (-) False vgll4a
XR_006247804.1 other upstream 513053 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 753740 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 789980 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 1241666 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 1241778 1507810 ~ 1512291 (-) False smim29

Expression Profile