RNA id: XM_043225363.1


Basic Information

Item Value
RNA id XM_043225363.1
length 2193
RNA type mRNA
GC content 0.52
exon number 16
gene id zgc:114123
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1998699 ~ 2003597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTATTAAAGAGACCCGTGAAGCGCACACGTTGAAGGACGCTTTTATCGCTGTGGTagttttttacgttttaaatatTAGTAGTGTTTGGCTCCGTTGAGAAGCTGAAACTCACCTGTTTTAGAGAAGATGATGGAGTTGTCTTTATACGACACTAGCACGGGTCACGGGTGTTCGTATGAGCAGATGTCTCTGGCTGAGATGCTGGAGCTTCAGGATCATCCTGTGAGTGAGGAGCAGGCCTGGGCTCTGTGTTATCAGCTCTGCCGCATGCTGTCTCATCGGTCCGGTGAGCAAACACGGAGGACGGCGGTGTCTCCGGCCGCGGACGCGGTGCTGCTCTCCAGAGACGGAGGCGTCTGTCTGCGGCCGAGCGGCGGTGATTCCTGTGTGATGGAGACAGAGGAGCAGgctgTGGAGTTTGTGGGCCGTCTTGTGTACTTGAGTCTGGACTGGGGTCTGGAGACGCAGGTGGAGCGTGAGCTAAGCGAGACCTTGGAGATCCTGGTGTGTCAGATGACCAAAGTGAACCTCGGCCACCGCCAGCCCATCTGCAGCATCGCTGACGTCATCCGTGTCTGTGAGGGGCGTCTGTACGATCCGAGTCGGGCAGCGAAACACTACAGGAGCGTGTGTTCCGGTCTGTTCTCGCACACCGCCGAGTTGTGTCAGTATCTGCAGATCGTTCAGCAGTCCAGGAAGAGTCTGCAGAAACTTTTGGAGTCCGAGACCCAACTGGTCGCTCGAGTGACCACCGACTGGGTGTCCTCGTGGAGGGATCTGGTGGACGAGTTGAGCCGAGGTGTGCTTCTACGGCCGCTGGAGAAGAGACGGACCGTCAGCAGATGCCCACAGCCTGCAGAGACCCCGCCGTTCAACCAGCTTCTGCAGGACATCCAGTGCAGACGCTACACTCTGCGCAAAGTCCAGCTCACTGATGCAGGAGACGGCCGAAGAAAACTAGACCCTCACCAGACTCTTCTGGAGTTCATCCGTTCACGGCCAAAGTTGAGACCGGCGTCCGAGCGCAGGATAGGCCTGAAGCCCAAAGAGCAGATCAGTCTTCATGAGTTGCTGATGGAGGAGATTCGTTCCACTGACCGCTGCAAACGTCTGGCACACAACGCAGAGTCCAACTATAAGCGTACAGAAACTCTTAGTCCACAACTCTGGTCTTTTAATCTTACTACAAAGGAACTATGTCTTGACGATAAAGAAGCGGCTGAAGAGCGTTCTTTTTTGAAGTCGGCTCCTCACAGGATACGCTCCGAAGCTGTTGGTTCAGGAAGTGATGCGCAGGATGCCAGTGTTACAGACTTCAGACTTGGTGCAGGAAAGCGCCGGACCAGATCTTTTGCTAGTAACAGAGATCTCTTCAAAAAGGTGAAGAGCAGTAACAGTGGGTCTGTTCTCACAACCATTGTTGATGTCATGAAAATGCACAGTTGTGAGGAGCAAGCAGACGTGAAGGACCTGTCGTGTGAGAGATATCGGGACTGGCGGGTTTGTTCTTGCTGTGCAGTGAGGAGCGTGTATTTCACGTGGCATAACGTCTGCTCGGTGTGTCGAAGGGTTGTGTGTCCCGGGTGTTGTCTAGAGATGCGACTGCCCTCCAAGCGCTGCGTGAACCTTCCTCTGAGCTTCTTCAAGCAAATCGTGATGAAAGATGGCGAGCAAAGCCAGAGCAACTTCTGGAGCGAGCGATGGTCCTGGAATTCAGTCTGgATTCCTCTGGTGCTGGTGTCCGGCGGCTCCGGCTCGTCTCTTCACACTCAGGCCATGCGCGACTGGTACAGTCAGGACCTCTGCGTGCGCTGCCAGAAGGACCTCCTGCAGGCCCACTGTCCCGTCACAGACTCTCAGGAGATCTGAACGCCTCCGTCCTTTTATCTGCTCCTTTATTTATGTGTTCGTGTGTTGTCATTGGTTGTTCACAGTGTGGCCGGCACCTCGTTGGTTCTAGACGTTTGTTTTTCACCAGTTGCATAGTTAGCTTTTAACGTTTTATATtatgaacaaattaataaatgcgcTGAACATTTTTACTAACGTTTGTATGCGTATGGAGCGCCGTGATGATGGCCTTCGCTGCGGTTTAGAGAGATATCAAGGGCAAATCTACACAGTGATGTTTCagaatggttaaaaaaaatagtgcgCAACTACTTCAATAAAAGAACGAGATAAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228138 lncRNA downstream 189694 1808555 ~ 1809005 (-) True G154077
TU228125 lncRNA downstream 282728 1715243 ~ 1715971 (-) True G154064
TU228122 lncRNA downstream 286657 1711732 ~ 1712042 (-) True G154061
TU228119 lncRNA downstream 291244 1707139 ~ 1707455 (-) True G154058
TU228118 lncRNA downstream 292104 1706275 ~ 1706595 (-) True G154057
TU228319 lncRNA upstream 42726 2046323 ~ 2046544 (-) True G154188
TU228325 lncRNA upstream 73967 2077564 ~ 2079496 (-) True G154194
TU228327 lncRNA upstream 89151 2092748 ~ 2095915 (-) True G154195
TU228334 lncRNA upstream 93187 2096784 ~ 2097008 (-) True G154200
XR_006247848.1 lncRNA upstream 95657 2099254 ~ 2102158 (-) False LOC122328884
XM_043224813.1 mRNA downstream 2694 1982649 ~ 1996005 (-) False top1b
XM_043224812.1 mRNA downstream 2694 1982649 ~ 1996005 (-) True top1b
XM_043224810.1 mRNA downstream 17734 1952150 ~ 1980965 (-) False plcg1
XM_043224809.1 mRNA downstream 17734 1952150 ~ 1980965 (-) True plcg1
XM_043224808.1 mRNA downstream 17736 1952150 ~ 1980963 (-) False plcg1
XM_043224386.1 mRNA upstream 734 2004331 ~ 2017858 (-) False ncoa6
XM_043224389.1 mRNA upstream 734 2004331 ~ 2017858 (-) False ncoa6
XM_043224388.1 mRNA upstream 734 2004331 ~ 2017858 (-) False ncoa6
XM_043224387.1 mRNA upstream 734 2004331 ~ 2017858 (-) False ncoa6
XM_043224384.1 mRNA upstream 734 2004331 ~ 2017858 (-) True ncoa6
TU228042 other downstream 486370 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 486408 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 486408 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 486408 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 486408 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 99113 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 767810 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 783699 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 921451 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 921932 2925529 ~ 2951628 (-) True G154445

Expression Profile