RNA id: XM_043225364.1


Basic Information

Item Value
RNA id XM_043225364.1
length 3589
RNA type mRNA
GC content 0.51
exon number 16
gene id phc2a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12771790 ~ 12810569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcctctctgctTGGTGTAGTCTGTGCCTGTCGGATAGAGCAGACCTCAGACATGGTGTAGGATATCAGGAAAGGAACAAGCGATTGAAGTTGAGACGAGGCCTGTTGAGGCTGGAAGGGAGTGTGAAGGATTGACAGTAACCGTGGATCGGGCACAGGCAGGCGGAGGCCCCCCATGGAGAAGGAGCAGGGAAGCGTGGCCCCTAGTGCCAACGTCACCATCCCCAGCACCACCTCAGCCTCCACCGGCAGCAGCACTACAACAAACTCCTGCAGCAGACAGCAGGCTGTGCCTCAGATATCAGTATATGGAGGaatcacagacagacagactgttCAGGTCATCCAGCAGGCCTTAAACAGGCAGCCCAGCACAGCGGCAGCTCAGTATCTACAGCAGATGTATGCAGCGCAACAACAACACCTCATGCTACAGACCGCAGCACTACAGCAACAGCACCTGAGCCTGGCCGCGGTGCAGCAGGCTAGTATAGTGGCAGGAAGACAAAGCTGTAGTCAGAATGGCACTACATCCCAGCAGACCGTGGCCTCCCAAACCACTATAAACCTCGCCACATCCCCAGCGGCAGCCCATTTGATCAGTCGAGCCCAGAGTGGGAGCTCTGTTCCAGTCTGCATTGCCCAGCAGGCCGTGCTTCTGGGAAACTCCTCCACACCCACACTCACCGCCAGCCAAGCACAGATGTATTTACGAGCTCAGATGGCACAGCAAACCAATCTTGTGCAAGTAGCGAGGAGCCTAGGACGAGCCGTTCCTTTGTCCCCTCAGCTCATCTTCACCCCAACTGCCTCAGTCACCGCAGTTCAGCCCGAGACCTCTGCGTTATCAATCAACACGTCGCCCACCAGCGGACAGGTGCAGAACTTGGCTCTCCGTGGCCAGCAGGGGGCGCTGGCTTCCTCCCTCTCTCAGTCTCAGTTACAGAGCCTGGGTGCGAAACAGTGCCCCGGGGCATCAGCGCAGCTCTCTGTGACCCGACTTAAAGGTCCTGAAGCGGGCAACTCTCAGGGATCTGCAGCGAAGAGCAGTCCTGCAGACACATCCTCAGAGACTGTgggaaaaaatgacaaaaccagTGACCTCACAACTAGGGAGCTTAACGTGTGTCCCAATGTGACCTCAGTGGCGGGCCATCCTCTCATCAGCACAGCATATACCCAAATTCAGACCCATCAGCTGCTCCAGCAGCACAAGCAGCAGTTCGTGATACAGCAGCAGCCTCAGATTCTGCAGAGAGGTCAAGCGCAGCTCTTAGAGGCCGCCACCATTCACCCTCACACGGTGCAAGCTGTAGCCATTCAGCCTGCCCTGTCAGCTCAGCCTCAGCAGTGCCCCATCCCTCTGCTGCCCAAAGTGCCTGTCACCTGCCAACAAGCTACCATCTTCCATTCTACTACTGTGAGTCAGCAGGCTCTTGCCCAGAATGCACAGCCACCCATGCTGAGCCACAGCAAGGCAGCACCTCTCCAGCTTACCGCAGTTAATGTCCAGATCCAGCCAGTTCAAACTCAACTGGAAGTAACCACACAGGATGCGTCCGATAAGGACACCACTGTTCCTCTTGAACCGCAGCTGCTATCCACACCAACACAAGTGCCAACCCTGACCGAACAATGCCAATCGGTCAAACAATTTCAACAAAGCCAAgtgacagaaaacacagaagGCAGAGTGAATGTGAAGGCAGGTGTGAGTTCACCTCCAGCCATGACCTCGGGCAGCGGCAACAATACGCCCACGGTGACCGGCAGCGCTCCGCAAAATGGCGAGAGTAAACCGCCGCCACAGGCGGTGGTGAAGCCCCAGATCCTCACTCATGTCATCGAGGGATTCGTGATTCAGGAGGGAGCTGAGCCTTTTCCAGTTGAACGTCCGTCCTTGTTGATTGAGAATTTAAAGAAGCAGAAGCAGCATCAGGCTTATTCAGACCTAGATAAGAGGTCACAGACCTTTCAAAGTGCAGACTCTGAGATGGAGGATCTTTCGCAGCAAGAGCTGAATAGTCAGAATGCCGAGCCAATGCTGTCATGTGAATTCTGTGGAGCCGTAGACTTTGCGTATAACTTCAAGAGATCCAAGAGGTTTTGTTCCACTGTGTGCACAAAGAGGTACAATGTTGGATGCACAAAGCGGATGGGACTTTTCCCAAGAAAATCAACCTCAGAGAACCCAAAGAAACCGAAAGCCTCCAACGCCAATCATCATAACAGCACCGCTGATGTCAGGAAACGGAATCCAAGTGCTCAAACAACCCTGGCCCCGTCTTTGTTATCCCCACACCCCTCTCATCCGAGTCATGGCGAGTCCAGCCAGTGCTCGGACATGTCCAGCTTCGAAGAGCCCATTTCGCCACTGTCCAACTCCAGCTTTGGAGCTCAAAGGCTTCAGAACGAGGAAAGATTCGATCACAGTCGAGAGCTCCCTCTCCTGACGCAGCACTTCCTGGCCAGCGACCCCACCAAGTGGAACGTCGAGGACGTCTATGAATTCATCTGCTCTCTGCCAGGCTGCCAGGAGATCGCTGAAGAGTTCCGCTCTCAGGAGATCGATGGCCAGGCTTTGATGCTCCTCAAAGAGGATCATCTCATGAGCACCATGAACATCAAACTGGGCCCGGCTCTGAAAATCTTTGCCCGCATCAATATGCTCAAGGACTCGTAGCCTTTCCCACAGCCTTATCTAGCTTGGAAAGGACATCCTAACAGCTCTGCACTGGTTTCCTCATCCCGTTGTGGTTTTGGGTCCTGGGGATTGCTGCTCCTCAAAACCATCCCAGTCAAACGGTTTCGTTCCTAACGCATGATGATGTGACTTGATTACGAATTTCTTGTATATTCAGCTGTGCCAGGCCTGGGAGGGGGCGACAATCCATCACGTCAAGGAAGACAAGCACAAGTACTTTACCATTTGTGCAAACAAATGTTCATCATATGGTAGCATGGAAACATGTTTACAGTTTCTTCACAGTTTTGAACTGGACTTTGATATTTGTCTGTCATAAAGTGACATTGTTGTAGTTCTGGTTCTCATTGTCACAGTTTGGTTAGCTAAGGAAAAAATGTGTACCTTTTTAGCCTTGCAGTGTGCCAACATTCGTAGGTAGTAAACTGTTCAGGTTTCTTCATCTCACAGGATGTTCCTCGATACAATTAACATCAGATTTTGTGCTCAAATGAGGCATTTTGACACAGGGATAACGGGAATTAAAACTCTCCAAGACGTGcctaatattttctaaatagcCCAAAGATTACGCAAATGTTCACGTTTTCAGTTCAAGTGAAAGCAGCATTTCCAAAAACCCATTTCCCAGCATTCACGTTTAAGGACTGCCAGTAATATCACTCTACCTTTAAGTTCAAAACCCATCTTGGTATAATCTGATGAACTGGGATCATTTTTCATAATCACTGTTATCCCAACCATCAATGTGTGCACTCATGTTTGGAAAGCTGGTGCAGCTCGTGTctctatttttacattcatcatTTGATCAAAGTTCTGTATTTATTGAGAGCAAGTCTCTgattctgttttatatttgaaaataaaaccgAAAACACTGAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0035102 PRC1 complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11457 PHC2, EDR2; polyhomeotic-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232855 lncRNA downstream 151733 12619019 ~ 12620057 (-) True G157255
TU232817 lncRNA downstream 237811 12533758 ~ 12533979 (-) True G157224
TU232812 lncRNA downstream 242297 12524479 ~ 12529493 (-) False G157222
TU232815 lncRNA downstream 242297 12524479 ~ 12529493 (-) True G157222
TU232665 lncRNA downstream 518854 12252731 ~ 12252936 (-) True G157106
TU232926 lncRNA upstream 42670 12853239 ~ 12853501 (-) True G157295
TU232929 lncRNA upstream 43728 12854297 ~ 12855852 (-) True G157298
TU232998 lncRNA upstream 219297 13029866 ~ 13040397 (-) True G157349
TU233002 lncRNA upstream 253085 13063654 ~ 13063904 (-) True G157353
TU233007 lncRNA upstream 292542 13103111 ~ 13103551 (-) True G157357
XM_043225312.1 mRNA downstream 46739 12674819 ~ 12725051 (-) False ephb2a
XM_043225311.1 mRNA downstream 46739 12674819 ~ 12725051 (-) True ephb2a
XM_043225313.1 mRNA downstream 97971 12665001 ~ 12673819 (-) True lrrc38a
XM_043223965.1 mRNA downstream 110658 12622070 ~ 12661132 (-) True vps13d
XM_043225402.1 mRNA downstream 210115 12555411 ~ 12561675 (-) True rcc2
XM_043224260.1 mRNA upstream 100501 12911070 ~ 12930813 (-) True LOC122328520
XM_043224194.1 mRNA upstream 125752 12936321 ~ 12940885 (-) False LOC122328487
XM_043224195.1 mRNA upstream 125752 12936321 ~ 12940885 (-) True LOC122328487
XM_043225087.1 mRNA upstream 256758 13067327 ~ 13080224 (-) True spsb1
XM_043225300.1 mRNA upstream 312879 13123448 ~ 13128638 (-) False ca6
TU232479 other downstream 847140 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 970158 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 1025170 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 1026395 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 1028987 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 330509 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 469687 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1516397 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1770525 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2536848 15347417 ~ 15474377 (-) False magi3a

Expression Profile