RNA id: XM_043225371.1


Basic Information

Item Value
RNA id XM_043225371.1
length 3836
RNA type mRNA
GC content 0.45
exon number 18
gene id senp1
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14554814 ~ 14563800 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCTGCTTTTAAATAAGGAAGAAGCGGGAGGCGTTGATGCAACTTTGTGTACTCAATATCTCATTCACAGTGTCGCTTACGGCTTCGGAGTAAAGCGACTCGGTTAGGAAAAAGTATCCACAACAGATACTAATACACACGCGCAGCTATTTGAAGCCCGCTTTACCTCAGATGTAATAATTGCTGGGCTGGTGTCTCGCGTGTTAGCAGCTGGTTAGCTGGTTGAGCTAAAGATCAGCGGTGTGGGTTTATCTGAACTGGTTTAGTCGTGTTTAAGTCAAGGATTCAGCTACTTTTATCTAACAAAGCTGGTTAGCAGTGGCATACGGATGAAGGGCAGAGGGAGCCCGCGTTTGGGACTGCGCTGACAGTCCTAAGGACTTATCCCGCTATAATCGAGGCTTTCGGTCTTTCATCATGTTTAATAAGTTCTACGAATGGATCGGAACCGGAATCGCCAGTCTGCGAAACGGAGCTCCCGCTGGTGGGGTTCATACCGGTTCCGTGAGAGTGGATCAGGACGGGACATTACGGAGAAAGAGACCGTTagactgTTTGGAAGATGGAGATTCAGCTGATCAGGAGGAGGAGAAAGTGGTGAAGAAATTCAAAATGGgAGATATTATGGATACAGTGAAAAATGCAGCTGAAGGAGTGAAGACCCATGGTTCGAGCGTTGCGTACTGGGTAAAGAACAGTGTCGTACCTAACCCAGGCAATGTGCTGCCCGTATCATCAGGTCCACCTCAAACAGGAATACCATCTGACCCCGCTGCCAATTCTGCTAAATCAGCATCTTTGTGGTCAGAAAACAGGtttggGGATCGGTCACATGATATACTTGAGGACACATTTGTAGCTCCCTCTGGTACAGTTGACTGGAGGACCGTCACGAAATCTGATTCCTTGCAAACTGAAGAGTCGGTGACCATATCAAAAGCGAGCAGAAGACAAGTTTGTATGGACCATCCACCCCATGAGACACACAAAACTAATGGACACTCTGTTAACTTACCCTCTGCCTCCACTCCAAAACCATCCCCCTCTCCCCGCTTGGGCAGATCCCTCTACCACCGACCACACAGCTTTTTGTCGTCATCTGAGACCAGTTCAGGAAAAGCGACTTACGCTAGCCTGTATGAGAAGACCTTTCCCATCCGAGTGGTCCAGAGTCCTTCACATGGCAGCTCAAACCGTCTCCTCCGGGCCAGAGCACGCTGTACAGCACAGGAGTCTGTGCGTGAGGAAGAAAAAGAGGTATACAGGCAACTCTTAGCTATTGTGTCTGGTGGCCAGTCGACCTTCCTTCATGATGGAAGTTCTCACTCCAGCATTCGCTCGCATCGAGATTTCTCCAGCATCCTGTCATCCAGTCGAAGTCGTCTTCATTGTGCCTCTCCAGCAGGCTCCGGCGCTGGCATGTCGTCCTACGGGTTATCCAGTCTGCCTCCCAGCCCCCAGCCTGGGTCCAGCCAGGCGTCCAGTGCCCTGCCAAGTCCTGGTGCGTCCTCTAGCATTCCAGAGCCTCAGCTATGGGCCCATGACCTTGAGCCCAGCGGAAAAGGACCAGCTGTTCCCTCAGCTCCCTCACCAGCTGCCCTTCAGGATACCTCCTCTCAGGACACACAGTCATCAGCTCATGACGGAGATTCAGTCATTTTTGTAAAGGAGAAGCAGGGCAAGAAGCTTGAAAGCTCAAGTGTGCCATGCTTCCAGGCTGAACTGTGGATCAAAGAACTGACTAGCCTCTATGATTCTCGAGCTCGGGAGCGACGGAGGTTGATTGAAGAGCAGGAGGCTCTGGCCTCTCAGCTCCTGCGCCAGCGCCTCTCTGGCGAGGGTCGAGCCGTCCCAGCGAGTGTTGAGCTAAAGGTTCGAGTCCCTCTAGAGAAGGAGGTTCCTGTTGCAGCTGTTATTCAAAAGCCTCAGCATATTAAAGAAGAGCCAGAATTCCCAGAGTTAACAGAGAACATGGAGAAGGAGGTGAGCAGAGCTCTGAGAGGAGGCGGTCAGGATGAGGTTCTCAGCGAGGGCTTCCGTCTCACCATCACCAGAAAGGACCTGCAGACGCTCAACCACCTCAACTGGCTCAACGATGAGGTTATTAATTTCTACATGAACCTGCTGGTGGAGCGCAGTAAAAAGCCCAACCTGCCCTCTGCTTACACCTTCAACACCTTCTTCTTTCCCAAGCTGCGGAGCTCCGGTTACAATGCTGTCCGCCGTTGGACCAAGAAAGTGGACATCTTTTCTGTAGACATCATATTGGTGCCTGTCCACCTGGGGGTGCACTGGTGCCTGTCTGTGGTGGATTTTCGTAAGAAGAGCATCACTTACTTTGATTCAATGGGAGGAAACAACGACGAGGCCTGCAGGATATTATTAAAATATCTGAAACAAGAAAGTGAAGACAAGAAGGGGCAGAACTTGGACACCTCAGAATGGACTCTAAAAAGTAAAAGGCCCAATGAGATTCCTCAGCAAATGAACGGAAGTGATTGCGGAATGTTCACATGCAAATACGCCGAGTACATCACCAAAGACCGGCCAATCACATTCACACAGaaACACATGCCCTATTTCAGAAGACGAATGGTATGGGAGATTCTGAACCAGAAACTATTGTGATTGGATGATTCTTTTTTATAGAACATATTTTGACATGATGTATGGATACGAGGGCTTCTGTGCACTTCAGGAACCCCGAGACAAATATGGGATGCCCTCAATCGCCGGTGGTTTCTATGCTGTCTAAATGAAACTTGAGGAAGTCCTCATGCAACTAAGTGTGACACAGTCTCAGCCTTTAAGAGTCAAGGGCAATGCTTTTATGCCCATTTATGGTTCCCTATAACTTGACATGCTTTTGCTTTGTCAGCAAATGTTATGTTACTGACTATGGAAGGATGTTATTTTCATATGTTCAGTCTTTTCTTCTGCAGTATCTGTCAATGTAAGGCCTGTCTTTTAAGATGATTTCAAACGATCATTTCTGGTGATtggaagtgtgtgtgcgagcgcgCTTGATCTCAAATCATCAGAAGTCATAAATGTTACAGTAATATGAGTGAGATTTACATTCATGTCTTTTCACTCAGTGACTAGTAAAATAGCTGGAACTGACAATCCCAGACTCACTCAGTGGTTTTCTAATGAAAAGCAGCAGTTTACTTaatatttgtgatatttgaTACCTGTATGTTTTATACAGATTCTGTCAagataattatacaattatttttaagtaagaGACTCAGAGTTGCCTTTTTGGATAGACAattttttaaagctgaagttTTGTGGTTCTGTGGTAAAGTGAGTTTTGTGGTCCTTTTTTCCCTAATGTGATTACACACGAGAACACATGCTGTAATACTTTTGACTTCAGTATGTTTTGGGATGGAGTTCTGCCTTTACAGGAATAtgtttatcatttgttttttgtttttttttatcagtatttgGTGGCTTTGTAATAACTTTTGTCTAATGATCATTTCAGTTGTCTCAGACAGGCTGCActtaacatttatttgctttttcacAACCCAGCATTGTCATACATCTTGCttttgttctgttctcatttgaGGTTACTCCGTTCTTCCTTTTTGTGTAAGAGAAAACTATTTTTGGCaactgtttctatttttttttttcttgcaggaTATTGACAATTATTGTATATACAGTGACTATACGGTAAAATTGAAGACATATTTAATACtcattttgtaccttttattaTCTGTTTTTGTATGTGAAACAGATCGTACTGGAAGTAAATTCCTGAGGTTATGTGTGTATCAggataaatgaaatcatttcaaatgaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233838 lncRNA downstream 93797 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 111363 14383738 ~ 14443451 (-) True G157928
TU233835 lncRNA downstream 136519 14361166 ~ 14418295 (-) True G157906
TU233841 lncRNA downstream 140814 14326384 ~ 14414000 (-) False G157906
TU233840 lncRNA downstream 147241 14326384 ~ 14407573 (-) False G157906
TU233937 lncRNA upstream 87624 14651424 ~ 14729662 (-) True G157966
TU233962 lncRNA upstream 121090 14684890 ~ 14702112 (-) False LOC122328902
TU233965 lncRNA upstream 121090 14684890 ~ 14702112 (-) False LOC122328902
TU233980 lncRNA upstream 121090 14684890 ~ 14691315 (-) True LOC122328902
XR_006247854.1 lncRNA upstream 266464 14830264 ~ 14830849 (-) True LOC122328920
XM_043224624.1 mRNA downstream 30178 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA downstream 30178 14428972 ~ 14524636 (-) True lrp1ab
XM_043224951.1 mRNA downstream 261248 14286961 ~ 14293566 (-) True idh3g
XM_043225081.1 mRNA downstream 282354 14257850 ~ 14272460 (-) True avpr2aa
XM_043225463.1 mRNA downstream 321763 14224588 ~ 14233051 (-) True zbtb48
XM_043224161.1 mRNA upstream 664 14564464 ~ 14569658 (-) True LOC122328465
XM_043224258.1 mRNA upstream 6547 14570347 ~ 14589622 (-) False fitm2
XM_043224257.1 mRNA upstream 6547 14570347 ~ 14579565 (-) False fitm2
XM_043224565.1 mRNA upstream 60453 14624253 ~ 14636325 (-) True ada
XM_043224382.1 mRNA upstream 108477 14672277 ~ 14679231 (-) True gdi1
TU233846 other downstream 224030 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1272487 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1337406 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2630164 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2753182 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU233895 other upstream 17294 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 783617 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1135469 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1135469 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1444306 16008106 ~ 16008915 (-) True G158231

Expression Profile