RNA id: XM_043225377.1


Basic Information

Item Value
RNA id XM_043225377.1
length 2630
RNA type mRNA
GC content 0.40
exon number 18
gene id LOC122329179
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11155822 ~ 11161895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACTTGGACGCTGACAGATTCGCCGCCGCAAAGCATGATGGGTAGGAATGGGACGCTGAAAGTATGGCGGATGGAGAAGAGCCGGAGAAGAAAAGAAGGAGAATAGCGGCGCTGACTGAGAACATGGCAGTTGAAGGTTGCAGTGTAGCTGACTGGGATGGCCGCTGGAGTCATGTGCAGAAGTTCCTGGAGAGAACTGGCCCCTTCACGCACCCGGACTTTGAACCTAGTGAGGAGACGTTACAGTTTCTGTTGGAAACATGCAAAATCCTGGTCATTGGAGCTGGGGGTCTTGGCTGTGAACTACTGAAAAACCTGgcgcTGTCAGGTTTTCGGCATATTCATGTTGTGGATATGGACATCATTGATGTCTCCAACCTCAACAGACAGTTCCTCTTTAGGTCCAAAGATGTTGGACGACCTAAAGCAGATGTGGCAGCTGAGTTTATAAACCAGCGTGTTCCTGGTTGTAATGTTGTACCacattttaaaaaaattcaggaTTTTGATGCGTTGTTTTATAGACAGTTTCATATTATTGTTTGTGGGCTGGACTCAATCATTGCCAGGCGCTGGATCAATGGGATGCTGTTGTCCCTGCTCTCTTATGAAGATGGAGTTTTGGATCCCAGTTCTATCGTTCCTCTGATCGATGGAGGGACAGAGGGCTTTAAAGGGAATGCCAGAGTCATCCTGCCAGGAATGACAGCCTGTGTAGACTGCACACTGGAGCTTTACCCACCACAAATCACTTTCCCAATGTGCACTATTGCTTCAATGCCACGGCTACCAGAGCACTGCATAGAGTATGTGAGAGTGCTGCAGTGGCCCAAAGACAAACCTTTTGGAGATGCTGTTGGTCTGGATGGTGATAACCCAGAGCACGTTCAGTGGGTCTTCCAGGAGTCTTTAAAGAGAGCCGCTGAATTTAATATCACCGGTGTCACCTACAGACTCACTCAAGgtgtggttaagCGAATCATCCCTGCTGTTGCATCCACAAATGCAGTCATCGCTGCTGCTTGTGCCACAGAAGTTTTTAAAATTGCTACAAGcGCATATATCCCATTGAATAACTATCTGGTTTTTAATGATGTGGATGGATTGTATACATATTCTTTTGAAGCAGAGCGAAAGGACAACTGTACAGCATGTAGCCAGGTTCCTCAAAAACTACAGTTCCCACCGTCTGCTAAACTGCAAGAGGTGCTGGAGTATCTGACTGAGAATGCTTCTCTTCAAATGAAGTCCCCAGCTATCACTGCAACACTTgaaggcaaaaataaaacactctaCCTGCAGACCATCGCCTCAATTGAAGAAAGAACAAGACCCAATCTCTGCAAAACTTTGAAAGAGCTGGGATTGGCTGATGGACAGGAGTTAGCTGTTGCTGATGTCACCACACCTCAGACTGTCCTCTTCAAGCTCAACTTCACGTCAGAAACATGCAGCATTAAACAAGtgcaaaattaatttcatgGAAGGGGTTCCTCAAATTCACCTGCAACAGCTTATTTGCAGCATATTTCAAACAACTCCGCATTTTGTCTGTATTTCCTTTCATCGTGTATTGCTTTCTTATTAATTTGTAACGCATAATTTATTAGGGATGTTGTCGTTTTAACAACCAACAGTCCAGGCAATTTTAGGATTATTATGCAAGGATGATGAGACCTGTACCACAAAGCAAATTAAACTAGTTAGAATTAAGGACTACAAAGGTGGATTAGGAATAGTAACGGTGGAATAGTAGCAAACACTGCACAACTAACTTAGTCTAGTACAAGTTAATCCCAGTCACAGGTAACAAACATGTATTTGACCAATCAGCATGTTTCGGACATGCAGTGAAGTCCCTCATCCTGTATCTTTAACTCTATGTTCATAATGATCTCTTATGCTGTATAAgtgttctttgtgtgttttttatgtataatgaacaatgaaaaaacaatcCTGTATTAAAAgcctttaaatagttttgtagTACAGGTCTCTGGTAATCCTgtgttgcattttttattatgtagcactttacagtaaggtctCGTTAGTTTAACATCAGCTGATGCTTTTACTATAAATGAGCCACATATTCATTACGGTATTTATTGAccttagttaataaaaatactgaaagctattcattgttattttgtgtTAGTTTAGCTAATGTTGATATTAGCAGACAgcttgattttaataatgctaaaaaataaagcGTTTAGTCGGTTTCTTGGATGgggcttagcctaaaccaggattaggccatagtttaATTAGgatatttaagtaattttcatAAACATGAAACATGGTGTGCATCGTAaggcaaaacaaaggcactgacatgttgtaagatcagtcagtgcatgaaacagctcagatttacatttagtctagtaactaggcttaagccttgtctgtgaaaccaggggctagtgttttattgttgttagttTGAAAACTATAGTTAACCGATGATAACAAATAGAACCTTagtgtaaagtgttaccattttaattttatttctcttgtaaaatgtttaagttAATGTTTGTACATATTGTTTACGCAGAggattgtaaattaatttgagcTATAATAAATTCTTTGctgttatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231883 lncRNA upstream 3775 11148863 ~ 11152047 (+) True G156568
TU231887 lncRNA upstream 29188 11124092 ~ 11126634 (+) True G156572
TU231864 lncRNA upstream 70218 11083788 ~ 11085604 (+) False LOC122328437
TU231865 lncRNA upstream 77147 11077362 ~ 11078675 (+) False LOC122328437
TU231851 lncRNA upstream 120327 11033791 ~ 11035495 (+) True G156551
TU231912 lncRNA downstream 49146 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 57140 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA downstream 83656 11245551 ~ 11311487 (+) True G156599
TU231969 lncRNA downstream 169847 11331742 ~ 11332927 (+) True G156633
TU232036 lncRNA downstream 370740 11532635 ~ 11533198 (+) True G156681
XM_043224114.1 mRNA upstream 8235 11141479 ~ 11147587 (+) True mfsd4ab
XM_043225340.1 mRNA upstream 50647 11100072 ~ 11105175 (+) True LOC122329135
XM_043224012.1 mRNA upstream 57280 11087801 ~ 11098542 (+) False nfascb
XM_043225296.1 mRNA downstream 2747 11164642 ~ 11168458 (+) True LOC122329091
XM_043224088.1 mRNA downstream 101503 11263398 ~ 11268541 (+) False LOC122328405
XM_043224085.1 mRNA downstream 101504 11263399 ~ 11268541 (+) True LOC122328405
XM_043224087.1 mRNA downstream 101504 11263399 ~ 11268541 (+) False LOC122328405
XM_043224086.1 mRNA downstream 101505 11263400 ~ 11268541 (+) False LOC122328405
XR_006247905.1 other upstream 80085 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 80656 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 231834 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 253682 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 454927 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 12526 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 350730 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 351878 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 353904 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 356570 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile