RNA id: XM_043225384.1


Basic Information

Item Value
RNA id XM_043225384.1
length 4039
RNA type mRNA
GC content 0.42
exon number 9
gene id iffo2a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12491866 ~ 12509002 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTCCCGTTTCCTTCGGATGGTGTTCTTAGACTGGGCTGAAATACGAGTCTCTGCTGCGAGTTGAGACCAATAACCAGCCCGTTTCATTAGCAGCGGACGGCAGGAGGGCAGCTGTGAGTTCATGAGATGTTTCCCGGACGATGCGCTTTATCCGGCCGCTAGAAGCGCGAATATGGCCTATTATTTGTGTGACATTAGATAAAGGGAGTGCACCTTGCGTCCGAGAGCATGGAGGTGACGTATGCTGCTTTACAGCTTCTGCGGTTTGATGCGTAGAAACACTTCTCACGAACAAAGATGGATTTACCTCGTCGTTTTCCGGACCCGGTTCTCAACCCGATGTTGTTCAACGAATCCGCGGCACCCGTCGGTATGAATGAAGCGTGTGCGGCTGGGAGCGGGTCCGGCGCCATGGCAACCAGCGCGTTGAGAAACGACCTGGGCTCCAACATTCATGTGTTAAAGACTCTAAATCTCCGCTTCCGCTGCTTCCTCTCCAAAGTCCACGAGTTAGAGCGCAGAAATAAGTTATTGGAGATCCAGCTGCAGCACGCCCAAGAGCAATCCCGGTACCGGCTGCTGTTTTCCCGGGAGCAAGCGGTCCAGACGAACCTCGAGCTGCCTTACTCAAACGCACTGTGTCAGTCAAGACTCCCCGGCAGAATCTGGAGTTTCTCACACACCGCCAGATACGGAGGACGGTTTGAGACCCATCAGGGGCCTGGAGTGTCCTGGACTCATCCCGACGGCGTCGGGGTTCAGATTGACACCATCACACCTGAACTCAGGGCCTTGTACAATGTTTTGGCCAAAGTCAAGCGCGAGAGGGACGAGTACCGGAGAAAATGGGAGGAGGAGGTGTCTAAGCGTCAGCAGATGGAGTCATTGGTGGAGACCTTACAGGAGACTGTTCAGTCATCTGAAGCTGTGCAGGGAGAACTGAATGAGAAGATGGAACGTCTTAAAACAGAGCTGGTGGTCTTCAAAAGCCTCATGCCTCATGATGAAGTGTCTGACTTGGACACTAAAATTCAAGAGAAAGCCATGAAGGTTGATATGGACATCTGCAGACGCATCGACATCACAGCTAAGCTTTGCGACGTGGCACAGCAGAGGAACTCAGAAGACATGAGCAAGATACTGCCATCCAGAGCTCCTCCTGAACAGAAAGGGggGATGGCGGTATGCAGGAGGAAGGAGTTTAAGGGTGAATCGGAGGAGCAGAGTTTGGAGACCGATGGTGATTCTGGTCAACAAGAGGAGGATGTGCCTGGTTCTCTCAACATCACTGACGAGATGAAGAGGATGCTCAACCAGCTGCGGGAAACGTTTGAGTTTGACGATGACTGCGACAGTTTGGCGTGGGAGGAGACGGAGGAGACGCTTCTGCTCTGGGAGGATTTCAGTAACTATAACAGTCTGAACCTCACCACAACGGCTGCAAGCACAGTCCCCACAGCATCCTGCACGACTGACTCTCATGGAGAGACACACGAGCAGGATCGAAGTCTGGGAAGCCTCATAAATGAAACGGAGTGCCTCTTTAAGACCAGAGAGCAGGAGTACCAGGACACCATCGGTCAGATTGAGCTGGAATTGGCCACAGCCAAGAATGACATGAACAGACACCTGCATGAGTACATGGAGATGTGCAGTATGAAGAGAGGCCTGGACGTTCAGATGGAGACCTGCCGGAGGCTCATCCAAAGCACAGCCACCACCGGCAGaCAATCGCCTTCCCTCAGCTCTGTGGCCAGCAGTGATTCAGGAAACACAGATGACATCCAGGACGAGCTGGAGCCTGATGGAGCGAGAGACGAAGAGAAAGAAGGGGCGCTAGAGGCGAACGGAGAAGTTAGATGATGAGCAGCCCTTCATCGTTCTGGTCTCTCCGCTTCTTTGTGAACCAGTCGCTCTTTTACGTGTCTGGTCACTTTTTCTTACACGGTACAGATGAGTGTGGAATTTGAGATTCCCAAAGAGCAAGTATTGGTGCTTTCTATGCTGTCTTAGAGCAGGACTAGCCGAAATAAGGCGGTTCCCTCTTCATCAGCACTGCCAAGGCATGGCTCCATAGTCTTCCTCACTAGCTTTAACTGAGGTCACACTTTATAGTATGATGAATACcgtaatgcatattaaaatatagaaattacatatattttattataataataatatattgttaatataatataaatattaaggtatatgtattaaatacacaatttcCGCTATCTATATTGctcatttgtttacataaatccGAAAGGCAACTTACACAACCACAATCAGTATAAATAACAGATTAATACACGTTATAAAGGAAAGTATCACTATACATCGGGCTCTGAAATAAATTCTGGCTTCTAACATCACAATAGTTAATAGATGCAATATGCTTCCTAAAATATCTCCGCTCCGGATCAGTTCAGATGTTTTCACCACATGCAATTGTTGCTGAACTAAACCACTGTGCACTAAGATCTATGCAATAATCTGGACTGGCGTTGTATTTTGCGATTGCCTTTGCTGAGACAGATTCGGTATGCGTGAGGTGATTCTCCTTAAGTGCAGTTTTTCCCttgtttctttgtattttctCTTTCAGTGTTGGAGAGTAGCGGTGGAACCCAAACATGTGTGCCTACAAATATGCTGTATACAATATCTTAGTTGCCTTATATTTTTCTCTGAATATTTTGAAGCCATGCTTTTGCTCTTGTATACACCATTAAATCCTCAATCGGATCTCATCCATGATGACGTAAAATGTATGTCTTAAGATGTTAAATGGTGTGAAATAATAAGGTTTTGGATGATCTCAAGAGTTAGAAGCCATATCAAGCTGCAGAATAGCTACTGAAAATAACTTTTGCTGTTACTTTTAGTTTAATGTGTGGGTCATTCTCAGGAAAATATGGTATTTGTGCTAAACATTCTGACTTTtagtttctaaaaaaataagtttacaaGTTACAATACCTGTTATCAAAGTACATATACTAAGCATAAAGCGCTATGTTATTTCAGCCACAtcacaatgaaaaatatataatttataaacttGCTATAGAGAATTGAGTAGATTCTGTAGATTTTGTATCACTCAGATTCATTGTGCCTtgaagtatatttataaaataaaaaataactaataatattaacattttgtcagaaagaAAGAGTCACATGGAAGTGCAAATTctgcatttttcagaaaaagcatgagatttttaaaaatactagaCAGTAAAAGCAtgaaatttcaataaaatacaaatttagtctgaacaaaaagaaaatatatttttatttaaagtgaaataGTGATAAATGAGACAATTTCcagacatttcatttaaaaaatacatttaaaattaaaaatgtttttatttaaaaaaaaaaaacactatttattttgcattacaaacAGTCAAACTGACTGATTAATGTGAAGAGGCACACCATGTCATCATTTCCTAAGAATGGCCCACACTGTCCCCGTCACCAAAATGTGTGTAATTGTTCAAGAGGTGgccagaaaatacagaaatgtttgcacattatttatttgtaattcagttttgaaacaaaatggatGCTCACGTTACCATATAACTtgttttgctaaatatatatttttcttacctTTTGTTTTTCGATCAATTACCatgtattgattgattgataaaaaCAGTATCTGGGTGATTGAGGTTTGCTATTATTGCCTTTTTTAAGTAATGGAAATGAATCATTCCATGTTTTACAATGCTCTATATGAGTATTCGGATGTTATACGTTGATACagtttatgatttatatttcttGCCTTAAATGTGGGTCAttctaataaaatgtatcagtttGTGCTGTATACTAAAGAAATCAGCTGACTAATCCTGTGCTGAAATCAGCATGTCTGAGAATGTCTGGAAATGAGAATTTGTTTTTGGAAATCCGGAGGACTATGCAAGTCTTATGTAATTGTAGTCCGATTTTATGctggttttaaataaaaaaaaagtttgccttA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232617 lncRNA upstream 105486 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA upstream 105486 12361473 ~ 12386381 (+) True G157084
TU232621 lncRNA upstream 105486 12361695 ~ 12386381 (+) False G157084
TU232604 lncRNA upstream 239889 12246217 ~ 12251978 (+) False LOC122328708
TU232614 lncRNA upstream 245766 12245874 ~ 12246101 (+) True G157081
TU232866 lncRNA downstream 220042 12729044 ~ 12787715 (+) True G157265
TU232925 lncRNA downstream 344239 12853241 ~ 12853832 (+) True G157294
TU232954 lncRNA downstream 480799 12989801 ~ 13040412 (+) True G157317
TU232968 lncRNA downstream 597458 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 605956 13114958 ~ 13115174 (+) True G157329
XM_043225184.1 mRNA upstream 1013 12450270 ~ 12490854 (+) False ubr4
XM_043225406.1 mRNA downstream 1229 12510231 ~ 12515171 (+) True LOC122329206
XM_043224000.1 mRNA downstream 15469 12524471 ~ 12525910 (+) True LOC122328350
XM_043225264.1 mRNA downstream 27696 12536698 ~ 12541914 (+) True draxinb
XM_043225404.1 mRNA downstream 33309 12542311 ~ 12545517 (+) True icmt
XM_043225405.1 mRNA downstream 45195 12554197 ~ 12555217 (+) True LOC122329204
unassigned_transcript_2622 other upstream 973331 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 975996 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 978021 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 979169 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1314834 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1545362 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1547683 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1790699 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2174988 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2203145 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile