RNA id: XM_043225399.1


Basic Information

Item Value
RNA id XM_043225399.1
length 2204
RNA type mRNA
GC content 0.49
exon number 18
gene id rnf207b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12546071 ~ 12553730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCTCACAGAGCAGATACAGGAGTGTCAATTGATTGTTTGTTGTTGAAGTCATGTCCTGCATCTAGGAACTCTCAGAGTACCTTCACACAGCGTTCACTCCACGCAGCAGTAGCACTCGGACAGGACAAGATGTCTGGAGAGATCTTTTCCCCTCTGGATAATCTCTATGACCTGGACAGTGCCAACTGCCATCCTCTGGTGTGCCATTTGTGCCAAGAACAGTATGAGCATCCATGTTTACTGGACTGTTACCACACGTTCTGTGCCAGCTGCCTTCGCGGAAGGGCCGTGGACAGCCGACTGACTTGCCCTCTCTGTGGACATCAGTCCGTTGTGAAAGGAATAAGCGCCCTCCCCCCAGAAGATCGACTCCTGAAGTTCTTGGTGGACAGTTCAGCCGACAGTGAGGAAACCGTGCAGTGTGCGAACTGTGATTTGGAGTGCAAGAAACAGGATGTGGATGCAATGTATTATTGCAACACTTGTTGCCAGCCACTGTGTCGAGACTGCAGGGAAACCACCCACCAAGCCAAGATGTTTTCCTGCCACGAGATTGTCTCCTTGGCAAAGCGCACCAAAGAAGCCCACAAAAAATGCGCCCTCCACGAGGAACTCTACATCATGTTTTCTACAGAGAAAAAGTCCATGCTCTGCATCAACTGCTTCAGAGACATGCAAGTGGAGAGCAGAGCACACTGCATTGATATTGAGACAGCATATATACAAGGCTGTGAAAAATTGGACCAAGCCGTCTTAGCTGTTAAGGAGCTTCAGACATCAGCTCGAGAAGCCATTATTCTGCTCAAAGCCATGATTGGAGAGGTCAGGGCCAACGTGGATGAAGAAGAGAGCGCCATCTGCACTCTGTTCAATAACATGCAGGAAAGACtagcagaaagaaaaaagattctGCTCAAGGCAGCACgaagTCAGCATGAGGAGAAGGACAGAGCCTTCAAAGAGCAGCTATCTCATCTTGCAGCACTCCTGCCAACTCTCCAAGTTCATCTTGTTACATGCTCTGCCTTCCTAAGCTCAGCAAATAAGTTCGAGTTCTTAGATATGGGATATCAATTAATGGAGAGACTGAAGAAGATCGTGAAGCTACCACACAGGCTGAGACCAGCACAGAGCAGTAAGATCAACACAGAGTATCGCTCTGAGTTCGCTCGCTGCCTGGAGCCGCTCTTGCTGTTGGGGCAGCGGCGGTCAGTGTCCACTACAGGGAGTGCGGCTTTAGGTCTCGTAAACGCCAGCGGACTGATGCAATCCTCTCTGTCAGTGCAGTGCCACTCTCCAGTGACGAGTGACATGTCACTGTGCTCTTCGGTGGTGCGCAGGCCGACCTCACACCGTTACATCAGCACCAAGGTCCTGCTGGCGGAGGGCGGAGAGACGCCCTTTATGGAGCACTGCTGCAACTACGAAAACAGCTACAGGACTTTACAGACAGAAATCCAGAAGCTCAAAGAGCAGGTGCAGGAGATTCACAGAGACCTGACCAAGCACCACTCTCTCACCAAACCTGACACCATGAACGAGATTTTGGAGAGGTCTGTTCAGGTGGACAGACAGATCTCAGCAGAATACTCCTCAGTCGAGCTCATGCGGGCCATGTTCGAGGAGATTTGGGAGGAGACGTTACAGAGGGTGGCAAATGAACAGGAGATATATGAAGcacaACTTCATGACCTGCTTCAGTTAAGACAGGAGAACTCCTATTTAACAACTATTTCCAGACAAATAGGCCCCTACATTCGCTCTATAGCAAAAGTGAAAGAGCGTCTGGAACCCAGGCTGAAGGAGCCTAAAGAGCTCAAGGATGATCGCACAGAGATCATGCTGAAGCTGTATGAGGACAGCACTTCTGCTGCGGACACGCAGCCCAGTAATGAGCTGTCCTGCAACACCGAGGACAACTGGACTCTAAACAGCCTATCAGAAGAGACCAATCCCAAGAATAAAGATTACTACAGGCCGAACAAGCAGAAGAACGCCACTGATACAGCCAATCGCAAAGAGATACCAATCTGAAACTGTTGTGTTGACCTGTCGATTTAAACACGTTACTCCCCAAAAATTAAGCGCGCATTTACATAATTCAAAATTATGGAAGCTTGAAAAACTACTAGTTTACAGTGCTTGTACTTTAGAGAATCACAGTAATGTCCAATAAACATTATactcagtttttattttaaa

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232817 lncRNA downstream 12092 12533758 ~ 12533979 (-) True G157224
TU232812 lncRNA downstream 16578 12524479 ~ 12529493 (-) False G157222
TU232815 lncRNA downstream 16578 12524479 ~ 12529493 (-) True G157222
TU232665 lncRNA downstream 293135 12252731 ~ 12252936 (-) True G157106
TU232663 lncRNA downstream 294090 12246217 ~ 12251981 (-) False G157104
TU232855 lncRNA upstream 65291 12619019 ~ 12620057 (-) True G157255
TU232926 lncRNA upstream 299511 12853239 ~ 12853501 (-) True G157295
TU232929 lncRNA upstream 300569 12854297 ~ 12855852 (-) True G157298
TU232998 lncRNA upstream 476138 13029866 ~ 13040397 (-) True G157349
TU233002 lncRNA upstream 509926 13063654 ~ 13063904 (-) True G157353
XM_043224001.1 mRNA downstream 14510 12521821 ~ 12531561 (-) True LOC122328351
XM_043225274.1 mRNA downstream 26878 12516922 ~ 12519193 (-) True her12
XM_043224674.1 mRNA downstream 105811 12384843 ~ 12440260 (-) True megf6a
XM_043224675.1 mRNA downstream 127768 12384843 ~ 12418303 (-) False megf6a
XM_043225497.1 mRNA downstream 333967 12204333 ~ 12212104 (-) True znf362b
XM_043225402.1 mRNA upstream 1683 12555411 ~ 12561675 (-) True rcc2
XM_043225403.1 mRNA upstream 1683 12555411 ~ 12561173 (-) False rcc2
XM_043223965.1 mRNA upstream 68342 12622070 ~ 12661132 (-) True vps13d
XM_043225313.1 mRNA upstream 111273 12665001 ~ 12673819 (-) True lrrc38a
XM_043225312.1 mRNA upstream 121091 12674819 ~ 12725051 (-) False ephb2a
TU232479 other downstream 621421 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 744439 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 799451 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 800676 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 803268 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 587350 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 726528 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1773238 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2027366 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2793689 15347417 ~ 15474377 (-) False magi3a

Expression Profile