RNA id: XM_043225412.1


Basic Information

Item Value
RNA id XM_043225412.1
length 1177
RNA type mRNA
GC content 0.38
exon number 4
gene id thap3
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9526592 ~ 9528135 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACCggaaaaataactgaaatcaatGTAATGTAGTTCGTTTTAAGGATTGTCTTTTGCGAATAAGAGAATGTTATCTCGGAGTTATCTCATCTTTATTGTTtgtaatataatgaatataccAAATAATGCAGCAAAGATCATGTTCACGTTATAGGTTTAATCACTTTGAGACACTGCGGGGCTTTTGATAAGCGCCATCTTTGTTCGGGGCAAAGATGCCGAAAAGTTGTTCTGCATATAATTGCACAAATAGGTACAATAACAAAAATCCCGAAATCACGTTCCACAGTGGTTTGGGCAACCGTAAAAATCTATTGTGGAACGCAGTGCCAACTCTCTTTGCAGTCCCAGCTCGGGATACAAAGCAAAATAATTGTAGGAAGAGGCTGAAGAGAGCTTTAAAGGCTGCTGCTGATAAATGGGATGACACCGCACCTGACAGGACGCCTCTTTTCACTGAGGAAACTCAAACTGAGGAGATGCATGAGGATGCTCAACACTCTCACGGCACTGAAGAGGCTTACTGTCAAACCACAAAAgatttAGCTGCCACAGACCACACCTATGCACTTTGGGATCCATGTACGACAAAAGCCcgtttgtttaatgttttagatGCTAACAGCTGGCTGCAGAAAAGGCTGCAGACCAAATGCAGATTGATAAAAAGAATGAAACTCAAACTGCTAGATGCTCAAAGAGAACTTCTGACTTTGCGTCGACAGCTCAGATATAGACATACATATCGTCAAAGAAATTCACAGCTCCTAGTATAATGGGGAAGTGGCTCCACAACCTAGTCAAGCAGTAACGAAGACCTCGGGTTGCACAAACATCTTTGAACTTTAAAGAAGCCAGAACTTTTGGTAATTTCTTGAAAAGCAGCAAAAGTGACAATTTTTTTTCGTTAATTGGACAGATACGTCcaattaaaacttaaatttacTGTGCTTTGGTTTTGACTTGTGTGAAAGATTTTCTGCCCAAAGAATTTTTAGAACATTTCTAGAATAAAtggtaacattttacagtaaggtcccttttgttaatctttgttaacattagttaggaataaaaaaaaaaattgatggtACATGCAAGTTCAGacttatgattttaataatgcattagtgaATGTTGAAATGAGCATTAACTAGTTAACTGCTTTTACAcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231000 lncRNA downstream 337695 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 373090 9153080 ~ 9153502 (-) True G155968
TU230977 lncRNA downstream 429329 9079533 ~ 9097263 (-) False ctnnbip1
XR_006247890.1 lncRNA downstream 453648 9070384 ~ 9072944 (-) False LOC122329247
TU231104 lncRNA upstream 73832 9601962 ~ 9602477 (-) True G156051
TU231107 lncRNA upstream 79358 9607488 ~ 9607948 (-) True G156054
TU231109 lncRNA upstream 84120 9612250 ~ 9612596 (-) True G156056
TU231365 lncRNA upstream 150131 9678261 ~ 9815494 (-) True G156235
TU231378 lncRNA upstream 253978 9782108 ~ 9831125 (-) True G156245
XM_043225257.1 mRNA downstream 9876 9215785 ~ 9516716 (-) False camta1a
XM_043224327.1 mRNA upstream 15356 9543486 ~ 9548342 (-) True pcmtd2a
XM_043224328.1 mRNA upstream 15356 9543486 ~ 9548339 (-) False pcmtd2a
XM_043223962.1 mRNA upstream 20994 9549124 ~ 9562123 (-) True myt1a
XM_043224521.1 mRNA upstream 87403 9615533 ~ 9621872 (-) True LOC122328677
XM_043224520.1 mRNA upstream 94323 9622453 ~ 9633367 (-) True osbpl2a
XR_006247818.1 other downstream 316628 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 599982 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 606867 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 606867 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 898201 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 273655 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 273655 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 303998 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 303998 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 702416 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile