RNA id: XM_043225413.1


Basic Information

Item Value
RNA id XM_043225413.1
length 1954
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC122329222
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5853109 ~ 5858747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACAGGGTCTGCCTGTCAGCTGCAGACAGAAGAAAGCTCCAACCGTTCTCATCCTTTCCTCCGGTCCTGTGCCATCATGGGGAAAGAGAAGATCCACATCAACATAGTGGTCATCGGCCATGTTGATTCTGGGAAATCCACCACCACTGGCCATCTCATCTATAAATGTGGAGGAATTGATAAAAGAACCATCGAGAAGTTTGAAAAAGAGGCTGCAGAGATGGGAAAAGGTTCCTTTAAGTACGCCTGGGTTCTGGACAAGCTGAAGGccgagagggagagaggaatTACCATAGACATCTCACTCTGGAAGTTTGAGACCACCAAATACTACATAACCATAATAGATGCACCAGGACACAGAGACTTCATCAAGAACATGATCACTGGGACTTCTCAGGCCGATTGTGCTGTTCTAATTGTAGCAGCTGGAGTGGGCGAATTTGAGGCAGGCATCTCTAAAAATGGACAAACAAGGGAACACGCCCTGCTGGCGTACACGCTGGGCGTCAAGCAGCTGATTGTAGCCGTCAACAAGATGGACTCCACGGAGCCGTCCTATAGTGAGAAACGCTACGACGAGATCGTTAAAGAAGTGAGCGCCTACATCAAAAAGATCGGTTATAGCCCCGCCTCTGTGCCCTTCGTCCCAATTTCAGGTTGGCATGGCGACAACATGCTGGAACCGTCTTCTAATATGCCGTGGTTTAAAGGCTGGAAGCTGGACAGGAAGGAGCATCATGCCAGTGGCGTTACTCTACTGGAAGCTCTCGATACCATCATGCCTCCAACACGCCCCACTGACAAACCCTTGCGTCTGCCCCTGCAAGACGTCTACAAGATTGGAGGTATAGGCACTGTGCCGGTGGGCAGGGTGGAGACGGGTATCCTGCGGCCCAGTATGGTGGTGACCTTCGCCCCGGTCAACATCACTACAGAGGTGAAGTCGGTGGAGATGCATCACGAGTCTCTGAGTGAAGCTCTGCCTGGAGACAACGTGGGCTTTAATGTGAAGAATGTGTCCGTTAAAGACATAAGAAGAGGTAACGTTTGTGGGGACAGTAAGTCAGACCCGCCTCAGGAAGCTTCAGGGTTCACAGCACAGGTCATCATTTTGAATCACCCAGGACAGATCAGCGCAGGTTACTCTCCTGTCATAGACTGCCACACGGCTCACATTGCCTGTAAGTTTGCTGAGCTTAAGGAGAAGATCGATCGCCGTTCGGGCAAGAAGCTGGAAGACAACCCCAAAAGCCTGAAGTCTGGAGATGCTGCCATTGTGGACATGATCCCAGGAAAACCAATGTGTGTGGAGAGCTTCTCTCAATACCCTCCACTGGGGCGCTTACGCGTCAGAGACATGAGACAGACCGTTGCAGTCGGTGTCATCAAAAGCGTGGAAAAGAAGATTGGCGGCAGCGGAAAAGTGACCAAATCTGCTCAGAAAGCTCAAAAATCTGGCAAATGAATCTGAATCTCCGAGTCACCTTGTCACCTCAGGCCCTCCCCAGCTTACATGCCCCTCTCATCTGGGCATGCTCAGTCTGTTTCCCCCGTGTGCTTGAAATATACACTCGAACCAAACTGGAGCTTGATGGACTGAAGGAAATGATGAAAGACATTACTACTTTGTGATTGGTTGCACTGTATATTCACTTTTACCAGAAGACCGGCACACATGTTGCATGGATGTCTGTCTTGATATATGCACGGcatctgttaaatgaatgtaGCTGGTagagctgagtgtgtgtgtgtgtgcgcgtgtgcgcgCAGTTGAAAGAAACCAGAATAATGATGATGTCCAAAGGAAAGTTTTGTATAGTTTATAACTGAGCAGTGACTGAAGGCTAATTGATCCAAAGCACCATTTATCTCCTTTCAGACCCTTGCAGCTGAAACCTgtgataaatcaataaaatattgccCAAGAACACgagtttataaattaaa

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247895.1 lncRNA downstream 190153 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 305401 5525041 ~ 5547708 (-) True G155238
TU229897 lncRNA downstream 356635 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 421585 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 740145 5111844 ~ 5112964 (-) True G155157
TU230003 lncRNA upstream 332350 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 490260 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 625907 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 626692 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 629877 6488624 ~ 6499749 (-) False G155391
XM_043225508.1 mRNA downstream 28862 5817641 ~ 5824247 (-) True LOC122329283
XM_043225521.1 mRNA downstream 126846 5722488 ~ 5726263 (-) True LOC122329292
XM_043225530.1 mRNA downstream 339721 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA downstream 339721 5509695 ~ 5513388 (-) False LOC122329296
XM_043225528.1 mRNA downstream 339721 5509695 ~ 5513388 (-) True LOC122329296
XM_043223967.1 mRNA upstream 1164 5859911 ~ 5865217 (-) True LOC122328332
XM_043225202.1 mRNA upstream 10379 5869126 ~ 5872179 (-) True sac3d1
XM_043225204.1 mRNA upstream 13547 5872294 ~ 5876865 (-) False haus8
XM_043225203.1 mRNA upstream 13547 5872294 ~ 5875807 (-) True haus8
XM_043225205.1 mRNA upstream 13547 5872294 ~ 5875770 (-) False haus8
TU229892 other downstream 373290 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 398062 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1018589 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1658111 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 872104 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 907861 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 914831 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 914831 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 914831 6773578 ~ 6822978 (-) False rps21

Expression Profile