RNA id: XM_043225431.1


Basic Information

Item Value
RNA id XM_043225431.1
length 5031
RNA type mRNA
GC content 0.46
exon number 8
gene id ikzf4
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16009720 ~ 16019647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATATTTGACAGCAGAGgtgtcaaataatatttttgtaaacaaaagcatatattttgttttgctaatGGGTTGCATCAAAGTGACAGATAATATGTGGAAATTTCTGAGTAATAGCAACTCATAACAACCCCTGCATTTGGCTTAGTATGAGCATTTCTTTAGATGTCAGCCTGTGTTCTGATAGGTCACAGGCTAAAGGGAGGGCAGTTTCTTGCACTTAACGTTCTCCGTTTAAGACTAGAATTCTATAGAATGGACACACAATTCAGCTCCTGAGCTAGAAATGAGATCTTGACCAGTGTGTGCATATAAATTATTCAGCTACTCGAACCGTGCAACCACACAGGAAAGGAAGAAATAACAAACTGCAGCTGGTGTGATGATGAATGCTGACGATTGCAATGGCCGTTCGTACATGTCAGGTAGTGGAGATTCTTCAACAGAGCGGGAGTTTTTTGCAGGGCTGAGAGGACCCACCGTGAGCACACCAAACAGTCAACAGTCCTCACCCAGCCGTTCACTCAGTGCTAACTCCATCAAGGTGGAGCTGTATAGTGACGAGGAGGCAGCTGGTGCTCCGTTGGCGGAAAGGAGAGTCGGGGAGAAGGATGAAGGATGGAAAGATGAAAAGGGCGAGTTGGCAGAAGATGGTGGCGTGGAGATGGTCGGAGGTACACGAGGGCAGGCTGGGAGCGGCTGCGGGGAGATGGCCAGCTCTGATTCGGCATCCCCTGGTCCCATTCGGCTGCCCAATGGGAAACTTAAATGCGATATATGTGGGATGATCTGCATTGGTCCCAATGTTCTAATGGTGCACAAGCGCAGCCATACAGTCTTGGTCTCGGTAGGTGAGCGGCCATTCCAATGTAACCAGTGTGGGGCCTCCTTCACTCAGAAGGGCAACTTGCTGCGTCACATCAAGCTCCATTCTGGCGAGAAGCCCTTCAAATGCCCCTTTTGTAACTACGCCTGTCGCCGCCGCGACGCCCTGACAGGACACCTCCGCACCCACTCCGTGTCCTCCCCTACAGTAGGGAAGCCCTACAAGTGCAGTTACTGTGGCCGCAGCTACAAGCAGCAGAGCACCCTGGAGGAGCATCGTGAGCGCTGTCACAGCTACCTACAGAGTCTGGACCACCAGCCGGCTCACAACACCCAGCCTGCACACGGTGACGAGTCCCATAACGTGGAGATGATGTCTGAACCTCTGATCCAATCCTCCTCAGAGAAGATGACCTTTATTGATCGGCTGGCTAATAGCATCACCAAGAGGAAGAGATCTACACCCCAGAAGTTTCTGgGTGAAAAGCACATGCGACTGAATATATCCGAAGCACCTTATGAACTCGACCCCAATCCTGATAAAGAAGGGGACATGTTGCTTTCACACCCCGAGGGTGACCCCGCTGCTTTAGCAGGCATGGGAGGGCGTTTCCTGCGGGGTCCTAGAGGAGGCAGCAATGATGTGGATCCTTCCCACTCCCTGCGGATGCCTCCCCACTCCGCTTGCCTCTCAGAGTTCACCCCAGTCATCAGCTCCGTCTACCCTCACATCACCCCGCTAGGGCAGCGTCTAAACTGTGCAGGGGGCATCTCCATGGGCCTGGCCGGGAGGGAGGCCGGCGAGGGTCATGAAGATGCGCCCTCCACCCGCAGCCGTGCTGCGTCGCCGAGCAACGGTTACCAAGATTCGACAGACACTGAGAGCATGGCAGAGGAACAGTGCGTCATCACCTCGGTGCCACCGGGAAACTTGAACCACCGCGGGCGCGAGCGGCACAGTCCTAGTCACGCCAAAGAAATGGACATGGAAGGGGACAGGGAGAAAGGGGTCCCTGGGGGTTTACCAACCAAGGCGAGTCCGCGCTCGCCACCAGCCAGGGAAGCCATGCAGGTGGTGGATGGGGAAGGGCGGCCGGTGCGCTCCTTCCGCTGCGAGCACTGTCGCATTTTCTTCCTGGACCATGTCATGTTCACCATCCACATGGGCTGCCACGGCTTCCGCCAGCCCTTCGAGTGCAACATCTGCGGCCACCGCAGCCAGGACCGCTACGAGTTCTCCTCGCACATTGTCCGTGGGGAGCACCAGGTTGGCTGAGGTGGGCTTGTAGATGGTGGAAGTCGAGACTGGGGGGAAATGTACAGAGAGTTGTATGCTGCTTTGAGATGGCGTCATGGCGTCTAGTTCGGTCTGCACCAGATTGGGGCACATTAGCACTTGCTTTTATAGTTAGCAGACATCAAATTTTACAGCCGAAGGCTAATCACTAATGGTACGACCATAAGACGTGCAATTGCATCCCATGTTGGAGGATGTCAGGAGGATACAAATGGGGGACAGGTCACATCCTCCAATTGCACTCCCGCATCAAGTCATTCATCGCAAGACGCAGCTGTTTTGCTTTAGAAGTGCCTTCCTTCCGTggggtttattttttatcagttgAGCAGAGAAATTCGAAGTGTGAGATTAGGTCTATACTCATCTGTTCGGTGGCGTTTACATTGAGTCTGCCTCttgaagagagaaagacaatgaACTGCTTAGACGTCCAAAGTCTGGACTGTTTCCAGAGCGGCTTTCCAAAGTTTCTGAGCCTGTTAAACAAGAGAAATCTATGCCTAGGAGTATTCACACAAACTTTGTGCTCTTTTAGGATACCTCGGTGGGACTGTTGAAATTAGGCGACTCAGGGAGGACACTGCTGACAGAGAGGGAATGGAGAGCAAGCAGCATGAATTGCAAAACTGAGGCTGGAGTATTGGTATGTTAGCCATATAAGGAGCACAGACACATATTGCCTTAATCGTTGCTTTATATGAACCCTGTACAAGCTAGTTGTCGAATTGCACATGGTTTTTAATGCTGGACGATTCAGTAGGTACCGTGCAGCTTGAATTCGGGTAACTTCAGAACTGAGATGATACGGCACTCTTGGGTCAAATAGGATTGGGGTCAGGCTAAGGCTCGGgtaattttatttctgtctaaAATGTATGTTGATGTTTTATTCGAGAAAGGAAATGAACTTGAAACATTTGCCTTAGTTTTTGAGTCTACAACCTCTGtcctgaatttaaaaaaaaactacaaaaaaaaacagttggttTCCTCGTGCCTCAGATCTTGATTGTCGTTTCAAACTTTATCTTGACCTCACTTAAGTGACGATAAAGATTTTGCCTATCAAATctattgaggtttttttttaaatcgtttttGTAGTACAAAGTCCCCGCCATCCATCCTCTGTAATGCTGCGAACACAGTGGGCCAcattatgttgttttgtttttttagacgCGGTAAAATCATTGCGGAGGGGGGAAAGGAGCCTTAATGTTCTGGTGCAGACCAAACGCAGACCCATGTTGCATTCCGTGACTTTGACGATGAGTGAAGGGGAAGGGTTGTTACCTCAAAAGGAGGATTGCACTTTTTCTAATTCTGCTTAAATGTGAGTGTTTTGCTGGGGCTGTTGGGAGGGTTTTAGGACAGGCGTGGCGGCACGGGGTGGGGGttggattttatttaaaggcttTAGGGGAGCAGGCACAGTAATGACTGGTAACTGAGCTTTGAAAcatattcttttgttttctgaaattgCTCTATTGCACTGATTTctgataaaaatgctatttagagaaaacaagaaacaattTGATACGAGAACACGTTGGTTATAAAGACCAGATAAACAGTgtggtgtttttaaaaacaattctatAAAGGCTATTTTCCTAATAACAAAAGGGGTCGCGGTCATTTAAGGATTCAGAACTGAACATTTTCTCCTTGTGTTGTAAAATTTGGTGCTTGGATGTTTGTGTGACTTCTGCCCTTGATATTGGACTTGTATCCTGTACGCTTGTCCTGTGTGGTCATGTCCTATATGAGTTCATGCATACGGTACTCTCGATCCCCACTGAGTACGAACTGCTGCTCGATTTTGAAGGAAGGAACTGAAACATTGTCGTAGAGTTACGTACCGTCCTGCCAAGATATATCGTGGCCTGTTTTATCAGTGGATCTCACTTGCACAAACTGAGACAAAACGAAAGCAACAACGAGTGAATTTTGAAGATTCTtgaagatttgttttgtttgattgctTGTACATTTCTCACCTCTATGTGACGTGGGCTGTGGTTAAGGGTACTTGGGTGTTGTGGCATGTGTGTATCACTTGACCTTGGAGGTGGTCAGCTGTTTCCAAAACTTGCTTACGTGTAATCCACTGACCCTACATCTTTCGATTATTTTTACGACGTTTGTAGGCCTCTTAATGCGTATGCTTGAATTCACTCCAGTGCAAGCCTACGGAGTACAGTATGAATGGATCGAAGAAGTGAGACCAAATCCAGTATTTACAAAGGTTAGATAACGACTTTGCACCCTTCATAgactttcattttctctcttttctgcagaaaatcaatttatttacttGAAATTATGGCAAAAACCATATATGACACTTAATGCACTTAATGGTCAAAAAGAAATTATGTAATGAATTCTAGAGAGCGTGTGAATGGGAGAGTTTGCATGTGTACTCGTTTGTTTGCTGGGGTTCTGCAACTGTTCTGCTTGTGAAATACTAGCTGCAATTTTCCCTGTTTCCTCTAAACCAAACCCAGCTCTTTTCTGCACCATTTCATATTTCTTATCCCCAAGGTGTGATGAgctcaatatttttaaatgaactgtgaAGCAACCATAATGAGCAGCAACTGAGAAAGAGAGACCTAGCATTTTGGGGGAGACAGGGATCAAACTCTCTGTCATTCTTGGGCTTTATCCCTGGgttcaatgtttttaaatattttgtgagaaaaaaaaatgtatatgacaAAGAAAAACTCTTTACCtcaaatttgttaaaatataaaaaactgccTCATGTTctataaaaggtgtgttggtttCAAGAGGTATTGTTTATTTGATCTTGTTTTTAAGGAGTGTAACCCAACTTTAAGTTGAAGTAATTTTTCATGTCcaataaagtaatatttgttGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09220 IKZF, ZNFN1A; IKAROS family zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234368 lncRNA downstream 805 16008106 ~ 16008915 (-) False G158231
TU234357 lncRNA downstream 43957 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 196793 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 220389 15728154 ~ 15789331 (-) True G158198
XR_006247887.1 lncRNA downstream 292476 15699771 ~ 15717244 (-) False LOC122329227
TU234426 lncRNA upstream 83522 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 99778 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 228913 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 337266 16355369 ~ 16358705 (-) True G158336
TU234531 lncRNA upstream 398822 16416925 ~ 16439280 (-) True G158353
XM_043224196.1 mRNA downstream 18155 15984905 ~ 15991565 (-) True wnt10b
XM_043224109.1 mRNA downstream 26551 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA downstream 26745 15978616 ~ 15982975 (-) False arf3a
XM_043224948.1 mRNA downstream 34011 15966421 ~ 15975709 (-) False phf8
XM_043224111.1 mRNA upstream 3214 16021317 ~ 16023370 (-) False dnajc22
XM_043224110.1 mRNA upstream 3214 16021317 ~ 16023369 (-) True dnajc22
XM_043225249.1 mRNA upstream 65629 16083732 ~ 16099759 (-) True acvr1ba
XM_043224814.1 mRNA upstream 84305 16102408 ~ 16115284 (-) True acvrl1
XM_043224262.1 mRNA upstream 100289 16118392 ~ 16126411 (-) True ankrd33aa
TU234366 other downstream 805 16008106 ~ 16008915 (-) True G158231
TU234273 other downstream 292470 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 292470 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 535343 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1420127 14581094 ~ 14589593 (-) True fitm2
TU234433 other upstream 125730 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 222707 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 339549 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1158549 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 1321164 17339267 ~ 17343385 (-) True G158609

Expression Profile