RNA id: XM_043225438.1


Basic Information

Item Value
RNA id XM_043225438.1
length 1995
RNA type mRNA
GC content 0.43
exon number 10
gene id fbxo25
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18646197 ~ 18653191 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cggCGGCCAATCACAAACGACGGGAGGCGTGCCTAACATTCCGCTTTTCTGAATGTTTACTTCCGTCAATATTCAACGAAAAGCAGAAAATTATCACCATAACAAAGGACTCGCTATCTCTGGAGCAGGTGGAAGAAGATGCCGTTCTTGGGCCAAGATTGGAGATCACCAGGCTGGAGCTGGATAAAAACTGAGGACGGCTGGAAACGCTTTGAATATTTCAACCACAAACTGGGAGACAACATCAATGAACTTACCTTGGAAGAATTGGACAATGACAAGGAGAATGTCTACGTGGGAGATGTCTGTGAAGTGGCTGCcaagaagagaaaaaaggaCTTCTTCAACAACAACACTAAGTCtcagtttttgttcCAGGAGCGGTGGATCTACGTTCAGAAGGAGAGCACTCGAGAGAGGCATGGCTACTGTACGCTTGGTGAGGCCTTCAATCGTCTTGATTTTTCCAGCGCCATTCAGGATGTAAGGCGATTCAACTATGTGGTCAAACTTCTGCAGTTGATTGCCAAATCCCAGCTGACGTCTTTGAGTGGAGCTGCTCAGAAAAACTACTTCAATGTCCTGGAGAAGATTGTGAGAAAAGTTCTAGATGACCATCAGAACCCACGGTTGGTCAAGGCGTTGTTGAATGATCTAAGCTCCACACTCTGCATCCTCATCCGAGAAGTTGGGAAGTCTGTGCTGATTGGCAACATCAACATTTGGGTCTGCCGTTTAGAAACCATCTTAAACTGGCAGCAGCAGCTCAACAATTTACAGATTCCAAAGCAAGTTTCAAATGGCATGACACTGAGCGACCTCCCTTTGCACATGCAAAACAACATCCTGTACAAGTTTAGTGATGCCTGTGACATCATCAATCTGGGACAAGCCACACCAATGCTGCACATGCTCAGTGAGGACCGGCAACTGTGGAAGAAACTGTGCCAGTTTCATTTTGCTGAGAAAGAGTTCTGCAGGCACTTAAATCTGTCAGAGAAGGGCCATGTGGACTGGAAGCTGATGTTCTTCACACTTCAGAAATACTACCCTCAGAAAGAACAGTACGGAGACACCCTGCAGTTCTGCAAGCACTGTAGCATCCTCTTCTGGAATgacTCGGGACATCCTTGCACAGCGAACGATCCGGACAGCTGCCTCACCTCAGTCTCTCCTCAGCACTTCATAGACCTCTTCAAGTTCTGAAATTCAGAACGTTCTTCAACCTCTGACCCTTTGATCACCTTTAACCAAGACTCTGaaactgataaaatattttttgacttttcaaCTCCGCTCCGAACCGTGtcctttcctttcctcttcTACGTTTCCCAGACGGTCGTTCTGTGATTAAAACGTTCAAACTTCAGAAAATGTAACTGATTGAATTTTCTGTTGCCTCACCCAAACTTTAAGGGCTTACGGAAAGATGTCACGatattaatgtttcttttgtattgtCCTTTTTCTGTTCCTTGTTGCGTTCTCTGAGAATTCATTTGTTCTATAAGCATAGAAAGATGGGAGGTGAACAGCGAAAAGAGGCGGGGTTTGTGAAgaattgtttgttaaaaaaactgtgtgtgaGATCGTAAGCAGAGGTTATCTTGTCTTTTCATGTATGTATTTTCGTTTGTATACCAATGAAGTGCACGTAGTCGTAGGTTAATGTTTACGTGGGTTCTCGTGTTGTTTTGTCATGCTGTGCGTATATATATTTGATGCGTTAACACTAAAGTGTACATTTGATGCACAAAACAACTTTTTACGATACACTTTTGTCAAATCTGCCGTGAGGGCAGATGGAAAATCTAATGTAAGCTTTGCTATTTatgaacaaatgtattttatatccTTTCTCTGAACTTTGTAATATTCCTTTACTATTCCAGTAATATAAATGTCATTGAAATGGCTTGTGTAGGATGTGTTTGGTACTATCAGGCATTTGAAAGAaacctaaaataattaaaacttttggGAAGTAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235436 lncRNA upstream 4307 18641494 ~ 18641890 (+) False fam110c
XR_006247880.1 lncRNA upstream 22218 18621826 ~ 18623979 (+) True LOC122329080
TU235422 lncRNA upstream 45021 18600902 ~ 18601176 (+) True G159002
TU235227 lncRNA upstream 76247 18565276 ~ 18569950 (+) True G158866
TU235245 lncRNA upstream 100707 18544910 ~ 18545490 (+) True G158880
TU235441 lncRNA downstream 205 18653396 ~ 18655822 (+) True G159018
TU235468 lncRNA downstream 85570 18738761 ~ 18738995 (+) True G159034
XR_006247885.1 lncRNA downstream 103094 18756285 ~ 18763992 (+) True LOC122329216
XR_006247886.1 lncRNA downstream 103094 18756285 ~ 18758744 (+) False LOC122329216
TU235569 lncRNA downstream 323232 18976423 ~ 18989619 (+) True G159107
XM_043224068.1 mRNA upstream 1505 18641501 ~ 18644692 (+) True fam110c
XM_043224112.1 mRNA upstream 50513 18593734 ~ 18595684 (+) True tmem18
XM_043224451.1 mRNA upstream 67457 18575198 ~ 18578740 (+) True LOC122328644
XM_043224445.1 mRNA upstream 83055 18547229 ~ 18563142 (+) True jph2
XM_043225344.1 mRNA upstream 111103 18532919 ~ 18535094 (+) True mfsd5
XM_043225175.1 mRNA downstream 21423 18674614 ~ 18689276 (+) True cmtr1
XM_043224183.1 mRNA downstream 38830 18692021 ~ 18729675 (+) True cpne9
XM_043224184.1 mRNA downstream 91831 18745022 ~ 18754478 (+) True klf15
XM_043224663.1 mRNA downstream 146381 18799572 ~ 18814653 (+) False LOC122328754
XM_043224662.1 mRNA downstream 147693 18800884 ~ 18814653 (+) False LOC122328754
TU235116 other upstream 587280 18057114 ~ 18058917 (+) True G158789
TU234842 other upstream 1222242 17423134 ~ 17423955 (+) False si:ch211-148l7.4
TU234757 other upstream 1474358 17105498 ~ 17171839 (+) False G158523
TU234762 other upstream 1563542 17082205 ~ 17082655 (+) True G158524
TU234761 other upstream 1563638 17082205 ~ 17082559 (+) False G158524
TU235541 other downstream 118759 18771950 ~ 18789618 (+) True G159081
XR_006247830.1 other downstream 147693 18800884 ~ 18814653 (+) False LOC122328754

Expression Profile