RNA id: XM_043225465.1


Basic Information

Item Value
RNA id XM_043225465.1
length 3189
RNA type mRNA
GC content 0.45
exon number 5
gene id klhl21
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14217507 ~ 14225401 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTCTCTCATGACGCGGAGTCATGGCGCGGACATGAGcgaagagaaaacacacacacgagcaaAGTTAAACGCTAAATAGGGATTAAAGACAATTTAGAGCAATCCGTCAAACTATCCGAGGCGCATAACAACCGAAATCGTTAACAGCTGGATTCGATGATTTCAGTGTTCTGACCAGACGTACGCCAAGAGAAATACCGTAAGCTATGGAGAAACCAGTTTTACAAACGCAGCCCTCCATGCTGCCCTTCTTCGATGCGGCCCATGCTGTCAACTTGCTCCGCGGCATACACGAGCTTCGCGCCGAGCGCAAGTTCTTCGACGTCACGTTGTGCGCCGAAGGCAAAGAGTTCCACTGCCATCGAACTGTGCTAGCAGCTGCAAGCACCTACTTCCGGGCCATGTTTGCCGGCACACTGCGAGAGAGCGTCATGGACCGCGTGGTGCTACATGAAGTGTCAGCTGAACTGTTGGGTCTCCTGGTGGATTTTTGCTATACAGGTCGCGTGACCGTCACGCACGAAAACGTGGACCTCCTGCTCAAGACGGCGGACCTCTTCCAGTTCCCATCCGTCAAAGAAGCGTGCTGCGCATTCCTGGAGCAGAGACTTGATGTTTCCAACTGCTTGGAAATCCAGGACTTCGCAGAGGCTTACGCCTGTCGCGAACTAGCAACTAGTGCTCGCCGTTTCGTGCTGAAGAACATCGTGGAGCTGGCGAAGAGCATGGACTTTGAACGATTGTCGTGGAAGCGGTTGCTGGAGTTTGTGTCTGATGACGGACTGTGTGTGGATAAGGAAGAAACAGCGTACCAGATTGCCGTGCGCTGGGTTAAAGCCGACTTGCAGCATCGGTTGCATTACTGGCCTGAGTTGTTGCAGCAAGTTCGCCTGCCCTTTGTTCGCCGTTTCTATCTTCTGGCCCACGTGGAGAGTGATCCACTGGTCTACTTGTCACCAGCCTGTTTACGGTTAGTCAGTGAGGCACGGAGCTTTCAGTCTTACGAATATGACCGCCATGACCGACCCAGTCACCGAATGCGCCCACGTCCCTCCACCGGCCTGGCCGAAATTCTGGTGGTGATAGGAGGATGTGATCAAGACTGTGATGAACTTGTTACTGTGGATTGTTACAACCCACAGACCGGACAGTGGAGATACTTAGCAGAATTCCCAGACCAACTTGGAGGTGGCTACAGCATAGCTGCCCTGGGCAATGACATTTACGTGACAGGTGGCTCAGACGGATCACGTCTGTATGATTGTGTGTGGCGATACAATTCCAGTGTGAATGAGTGGACGGAGGTCTCCCCCATGCTGAAAGCCAGAGAGTACCACAGCTCGTGCGTCCTGAAGGGTCAGCTCTATGTGGTAGCCTCTGACAGCACAGAGCGCTACGATCATACCCTAGACTGTTGGGAGGCCCTTCCGCCCATGCCACATCCCATAGATAACTGTTCTACTACAGCATGTAGGGGGCGACTCTATGCCATTGGCTCCTTAACTGGAGAGGACACCATGGCAATTCAGTGCTACGATGCTGAAAGCAACCGCTGGTCGCTAGTGAACAGTGGAGAGCTGCCTCCGTGGTCCTTTGCCCCCAAATCAGTGACCCTAAATGGGTTAATCTACTTTGTAAGGGATGATTCAGCGGAAGTAGATGTGTACAACCCACAGAAAAACGAATGGGATAAGATTAGTCCCATGACACAAGTTCATGTTGGAGGCAGTGTCTCTGCTCTTGGCGGGCGACTCTATGTGTCCGGTGGTTATGACAACACTTTTGAGCTATCTGATGTGGTGGAGGTCTACGACCCCTCTGTTCGATCTTGGACCCCAGCTGGCCGGCTCCCCCAGCCCACCTTCTGGCATGGAAGCGTCAGCATATTCCGACAGTTCATGCCTCATGTTCCAAGCACCTTTGAACCCATCGACATACCTGAGGCTAACGCCATCCACCTCCACAGACACCACCGCAACCAGGCACTTCACAACCACAACAATAATGTCAATCAGAACCGCAACCAAGATGTCAATGAAGTGCACTGAGAACTTTTTTTTCGAAAGATGAGTCTGAATGTCATTCAGTGTGACATTGCTATTCTGTGTTTTGCACTTTATGACATGTTCACCTCAACTGGGCAGCAAAGGGAGCTGGTGAATGGACAAtcaatgtttgcattttttctcCCATTAACCCAGTGTTACTACAGCTTTAATTGTTGCATGCATTTCTAATGCTGACTGTGTTTACCCTAAACAGAGACTTGAGAGAAGTGGCTCATGAAATAGTGCCTATCATGTATCGCTATCATGAATTTCAAGCAATCGATACCATGGAAATTGCATGAAGGTTAtgctattttttctttaattaattgtttaattcaGCATGGATCTCCTAAAGTGATTTGCAACATTCAAGTCAACATagacaaaaaatttaatataatataaggcCATAACCTTAATGTGAAGTAaaattgtttcttaaaaaatataattttgagaCCCAATCATTCCAAAAGGTGAAAATTtggtgtgtatatgcatgtttataacGTATTCTGCAATGTGGataacaaatgttattttatatacagttaaaagtctaaaattaattatttaggaGAATTCGagattttccaaaaacaagACAACAGATAAACAACTGTGTCCCAGCACCCATTGCAACccattgtttaatattcattttactagaattttatatttcagacaATCTAGCGTGCATGCAGTGATcacattttttgtgaatttgtaTCCGACTTGCTTTTCaactcatattttaatattaaatttattatgtaGTCATAGTTTATTTTAGAGGAAGGTGTTAGTTTACGAGAAACAGCTTGTTTATTAAACCGCCTGCGATCATGAAGAAAACACGAGGAATGGATGTCAAATATTGTATTCGGATGCTGTACTAATAACTGGAAGTAGTAATTCAGTATCTCGTTATTGAATAAACGTATGTGTTTGACGATACCAGTACTTATGAAACTAATTATTTACAACACGCTTAAACGGTacttgatgtttattttatttttttcttacagaatGTTTAGTTTGTGGCCAAAACCATTTGTACATTACAGACAAGGCAATGATTTGTGTAATGTTTGTTTGCGTGGTCAACCAATAAATGACTGCCAGCACTGTTA

Function

GO:

id name namespace
GO:0035853 chromosome passenger complex localization to spindle midzone biological_process
GO:0016567 protein ubiquitination biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005827 polar microtubule cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233262 lncRNA upstream 20811 14196431 ~ 14196696 (+) True G157531
TU233251 lncRNA upstream 69891 14147410 ~ 14147616 (+) True G157521
TU233224 lncRNA upstream 122460 14094078 ~ 14095047 (+) False c1qtnf12
TU233225 lncRNA upstream 123007 14094078 ~ 14094500 (+) False c1qtnf12
TU233223 lncRNA upstream 123049 14094078 ~ 14094458 (+) False c1qtnf12
XR_006247865.1 lncRNA downstream 39263 14264664 ~ 14273735 (+) True LOC122328961
TU233288 lncRNA downstream 79173 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA downstream 79173 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233290 lncRNA downstream 79173 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233302 lncRNA downstream 148176 14373577 ~ 14375050 (+) True G157551
XM_043225303.1 mRNA upstream 68298 14141884 ~ 14149209 (+) True olfml3a
XM_043224793.1 mRNA upstream 91306 14106089 ~ 14126201 (+) False c1qtnf12
XM_043224791.1 mRNA upstream 91339 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224792.1 mRNA upstream 91339 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224790.1 mRNA upstream 91340 14094786 ~ 14126167 (+) True c1qtnf12
XM_043225464.1 mRNA downstream 7700 14233101 ~ 14239250 (+) True nol9
XM_043225467.1 mRNA downstream 15344 14240745 ~ 14245704 (+) True casp9
XM_043225079.1 mRNA downstream 21041 14246442 ~ 14257712 (+) False arhgap4a
XM_043225080.1 mRNA downstream 21041 14246442 ~ 14257360 (+) False arhgap4a
XM_043225077.1 mRNA downstream 21042 14246443 ~ 14257712 (+) True arhgap4a
XR_006247900.1 other upstream 160686 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 163007 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2698971 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2701636 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2703661 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 74300 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 458589 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 486746 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 510600 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 766949 14992350 ~ 14996145 (+) True G157656

Expression Profile