RNA id: XM_043225468.1


Basic Information

Item Value
RNA id XM_043225468.1
length 1857
RNA type mRNA
GC content 0.46
exon number 11
gene id ddost
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13882388 ~ 13886080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTAGCGCTGACGTTGTCCAAAGGAGGAAAATGGCGATAGGCTGCTTGTCAATGAGGGATACCGCGACTCCTGCAACATTAACTTGCAAAAGACGAGGCGCTACGATGGCCTCAGCGTCGTCTGGTGGGTTCGGCAGAGGCGCCCTGTTTGTTTTATCCGTGGCGTGTATGTTGCAGGCGGTTTTAGGAGACGGAAAGACTCTCGTTCTGCTGGACAATCCCAACATCAGAGACACTCATTCAATCTTCTTCCGCAGTTTAGCAGATCGTGGGTTTGACCTTACCTTCAAGACTGCTGATGATCCTGGGCTCTCATTGATCAAGTATGGACAGTTCCTTTATGACCATCTCATCATTTTCTCTCCATCAGTGGAAGATTTTGGGGGCAACATAAATGTGGAGACCATTACAGCCTTCATTGATGGTGGAGGAAACGTTCTCGTTGCTGCCAGCTCCGACATTGGTGATCCTCTGAGAGAGCTAGGCAGTGAATGTGGGATTGAATTTGATGAGGAGAAAACTGGTGTTATTGACCACCATAACTATGATGTTTCAGATCCTGGCGAGcacaCCCTGATTGTTGCAGACGCAGATAATCTTCTTAAAGCCCCAACTATAGTTGGCAAGCCCACTGATAAACCAGTCCTGTTCAAAGGTGTTGGCATGGTGGCTGATCCAGATAACTCTCTGGTGCTGGATATTCTGACAGGATCCTCCACCTCTTATTCCTACTTCCCCGATCGCCCCATCACGCagTATCCTCATGCAGTTGGAAAGAACACCCTCCTGATCGCTGGTCTGCAGGCAAGAAACAATGCACGCGTGGTTTTCAGCGGGTCACTGCACTTTTTCAGTGACGCTTTCTTCAACTCCCCTGTGCAGAAGGCTGCCCCTGGGTCGAAGAGGTACGAGCAGACTGGTAACCAGGAGCTGGCTGAGGCCCTGTCCCGCTGGGTGTTTAAAGAGGCTGGTGTTCTGAGGGTTGGGGCTGTTACCCATCATCCAGTTGGAGAGAGCACCCCCCCTGCTGCCTACACCATCACTGACCTTGTGGAATACAGCATCGTGATTGAGATGTTGTCTGGAGGAAAGTGGGTGCCTTTTGATGGAGATGACATTCAGCTGGAATTTGTCAGAATCGATCCATTTGTTAGAACCTACCTCAAGAAAAATGGTGGAAAATACAGTGTACAGTTCAAGCTTCCAGATGTGTATGGAGTTTTCCAGTTCAAAGTTGACTACAACAGACTTGGCTACACACACCTGTACTCTTCAACCCAGGTTTCTGTGCGCCCCTTGCAGCATACCCAGTACGAGCGCTTCATCCCCTCTGCCTTTCCATATTATGCCAGTGCCTTCTCTATGATGGCAGGACTCTTTGTTTTCAGCGTCGTCTTTCTGCatatgagagaaaaagagaagtcTGATTAAAATAAGACTCAGTGAAGAGGAgtgcaagaaaaaataaaagcaaaaatgtcttCAGACCTCTGGTAGTCATGATGAATAGAGATCTGAAATATGTTGGTTTGGGCTGGTTTTGGTGAGTTGTGCCAGTACAATTAAAAGCaacatttgtacatttgttttgaaaggGGGGTTGGGTGGTCTAACAAaagatatgtttttgtttactggtTTGCAATCTGGTAATTTATAGTGATTTAGGGCACacttcatgttttatttgtacaaaagGCAACTTGAATTGGTTTTATGATACAGCATGCACTGATGTTTTGGCTCTTGCTAtgaaatttttgttttgaaatctaCCATTTTGTAAAAAGAGGAATGGATTTTCAAAATGTGGTTGAAATACCTGAAGACAGTAAAGTTATGACATTCCAccacta

Function

GO:

id name namespace
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233703 lncRNA downstream 56799 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 109080 13772775 ~ 13773308 (-) True G157813
TU233665 lncRNA downstream 135217 13742257 ~ 13747171 (-) True G157799
TU233620 lncRNA downstream 446527 13433755 ~ 13435861 (-) True G157765
TU233023 lncRNA downstream 760362 13121813 ~ 13122026 (-) True G157365
TU233774 lncRNA upstream 171757 14057837 ~ 14075937 (-) True G157863
TU233788 lncRNA upstream 255859 14141939 ~ 14142168 (-) True G157874
TU233789 lncRNA upstream 257582 14143662 ~ 14143930 (-) True G157875
TU233765 lncRNA upstream 336729 14222809 ~ 14225394 (-) False zbtb48
TU233794 lncRNA upstream 350272 14236352 ~ 14237014 (-) True G157880
XM_043223981.1 mRNA downstream 670 13869388 ~ 13881718 (-) False plekhm2
XM_043223979.1 mRNA downstream 670 13869388 ~ 13881718 (-) True plekhm2
XM_043223982.1 mRNA downstream 2476 13869388 ~ 13879912 (-) False plekhm2
XM_043223984.1 mRNA downstream 13819 13852466 ~ 13868569 (-) True ano11
XM_043223985.1 mRNA downstream 14495 13854273 ~ 13867893 (-) False ano11
XM_043225055.1 mRNA upstream 1116 13887196 ~ 13897098 (-) True zbtb17
XM_043225056.1 mRNA upstream 1116 13887196 ~ 13895641 (-) False zbtb17
XM_043225057.1 mRNA upstream 11726 13897806 ~ 13901112 (-) True hspb7
XM_043225568.1 mRNA upstream 26475 13912555 ~ 13923481 (-) False fam131c
XM_043225566.1 mRNA upstream 26475 13912555 ~ 13923450 (-) True fam131c
TU233040 other downstream 600061 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 664980 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 1957738 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2080756 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2136993 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 440886 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 695014 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1461337 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1813189 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1813189 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile