RNA id: XM_043225483.1


Basic Information

Item Value
RNA id XM_043225483.1
length 5839
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC122329272
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 905611 ~ 958991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTGTAGACAGCAGCGGCGTCGCGTCGCGTCGCATGCGGGATATTTAGGGTGTTACTGCGCCACCACTTATAAGTACATTCTAGTGTATGGCAAGTGGATTAAATATTCTCTACTGCACCACTAACTACTTCCAGAACGATTTTAACCTACCCACATTTAACCTTTAGTGGCACAAAGCACCGCAGGAGACGCAGAGTCGGTGTTGGACATAAGCATGGCTGAGCGCGGGACGTATATCACAGCGCGTCTTTGCCCGGAGAACACGGGAGATATTTGACTCGGGTTAGTGAAGCTGAAGGAGAAGACGATGGACAGCCGGACCGAGAATCCGACGAAGGCAGCTGGTTATCTGAAGGAGCTGAATAAGATCATAGAGACGCAGCAGACGCTGCTGGAGAGGCAGAAGAGGCGCATCTTTGAGCTGGAGCAGCATGTGTCCGATCTGTGCGTCGAGAACAGCCGCCTGAGACACGAGTACCAGCGGCATCTGCTCACCTGCAGACTGCGCTCCATTCAGGAAAACAGCCCGCAACAGCAgtcaGAATATGGGAATGCAAGAATCGTCAGAAGGCATGCTTCTCTTCCTGTGGAGATGACAGACAGTCCCAGCAGCCTCAGATCAGCCGTGTGCAGGAGAACTGTGCCGTGTCGACAGTGGAAGTCTGCATCCTTCGGTGTGGAGGGGAATGTTCAAAACAGTGAGCCAGGCCCATCCTTGGACACCAGCACAGGATTTGGCCATGGCCGGGGCCCGGTCACACACAGTTCTTCCTTGAGTCCGGACCAGTTTGAGAGCCCAGTGTATGGCCACAGCGTCCAGCCCGGTCCACAGCGCCCTCAGAGGCCCAAACTACAGCACTCCCAGTCCATCCTCCGCAAGCAGGCAGAGGAAGAGGCCATCAAGCGCTCGCGCTCCCTCTCTGAGAGCTATGAGCTCTCCACAGACCTGCAGGACAAGAAGGTGGAAATGCTTGAGCGTAAATACGGAGGCCGTTTCATAACCCGCCATGCAGCGCGCACCATCCAGACAGCTTTCCGCCAATACCAGATGAACAAGAACTTTGAGCGCCTCAGGAGCTCTATGTCGGAGAACCGCATGACTCGCAGGATCCTTCTGTCCAACATGAGGATGCAGTTTTCCTTTGAGGCGCCCGAAAAAACCCACAGCTCTGTTTTGGAGGGGAGGCAGATGTCTCTCCTGGACGACCTCAGCCAAGTAGGAGGCATGGTGCAGGCTGCAGAGATGGTCCCTGTCATTTTGGAAGCCCCGGAAACTCAAAACGACTTGACAGACACCATCACAGAGCTAGAAGACACTTTCTCCAGGCAGGTGAAGTCACTGGCAGAGTCGATTGATGATGCTCTGAACTGCCGTAGTCTGCACAAAGAGGAGACCCAGCCCGAGCCATCAATCTCTCAGGAGAGCAAGCATCAGGATAATGAGATCTGCGACGTGACGCTCTTCATCGATGAAGAGGAGCTCTCTCCGCTGGTCCAGCCATCCAGGGATGAGAAGCTGGACACGGAACCTCCTTCCCTCGAGCGCAAGGGGCCAGACTTACCCCTGCTGACCATCGAGCCTCCGAGTGACAGCGCAGCAGATACCAGCCACCTCACCAAGCAAGATTTCGCCCAGCCACTAAACGTTCACCAGCGCACAGTGGCTGGACCCCGTCCCAAACCAGCGCTGCCTGCTAGAGTCCCCTCGCTCTCTGGAGATGAAGAGCCGCTTCGACACCGGCAGCTGGAGAGCCACCTGGCCACCAACGGCAAACGGCAGAGCAAGTCTGAGTCAGACTTCTCAGATGGAGACAACGACAGCATCAACAGCAACTCAAACTCCATTGACACCATAAACTCAGAAACGTCATCCAGAGACGAACAGTGTCTCAGCAAACAGACGTACCACAAAGACACTCGCAACAGCTGGGACTCTCCGGCCTTCAGCAGCGATATCATGCGCAAGAGGCAGTACCGCATCGGCCTCAACCTCTTCAATAAAAAGGCGGAGAAGGGCATCCAGTACCTGACGGAAAGGGGCTTTGTACCTGACACGCCCGTGGGTGTGGCCCACTTCCTGCTGCAGAGGAAAGGCTTGAGTAGACAGATGATTGGAGAATTTCTTGGGAACAGACAGAAACAGTTTAACAGGGATGTCTTAGACTGTGTGGTGGATGAGCTGGATTTCTCAGTGATGGAGCTAGATGAGGCTTTGCGGAAATTTCAGGCTCAAATCCGGGTTCAGGGCGAGGCACAGAAGGTGGAGCGCCTTATCGAGGCTTTCAGTCAGCGTTACTGCATCTGTAACCCTGATGTGGTGCGTCAGTTCAGAAACCCTGACACCATCTTCATCTTGGCCTTCGCCATCATCCTCCTCAACACAGACATGTACAGCCCCAACGTCAAGCTGGAGCGCAAGATGAAACTTGAGGACTTCATCAAGAATCTCAGAGGGGTCGATGATGGCGAGGACATCCCTCGGGAGATGCTGGTTGGGATTTATGAGCGAATCCAGAAGAAGGAGCTCAAAACCAATGAGGACCACGTGTCTCAGGTGCAGAAGGTGGAGAAACTCATCGTGGGCAAGAAGCAGATGGGATCACTTCACCATGGCCTTGGATGTgttCTGTCTCAGGCTCATCGCAGGCTGGTGTGTTACTGCCGACTGTTCGAGGTCCCAGATCCCAACAGACTGCAGAAACTAGGGCAGCACCAGCGGGAGATCTTCCTGTTTAATGACCTGCTGGTGGTTACCAAGATCttccagaagaagaaaaactcaGTGACATATAGTTTCAGgcagtctttctctctgtatggGATGCAAGTGATGCTCTTTGAGAACCAGTTCTATCCAAACGGTATCAGGCTGACTTCAGCGATTCCTGGCGCAGACTTCAAAGTCCTGATCAATTTTAATGCTCCTAACATTCAGGACCGCAAGAAATTTACCAGTGATTTGCGAGAGTCCATCGCTGAGGTCCAGGAAATGGAAAAGTACCGGATTGAGTCTGAGTTGGAGAAACAGAAAGGAGTGGTCCGACCCAGTATGTCTCAGAGCATGTCGGGCCTGAAGAAAGAGAGCGGAAATGGCACAATGGGCCGCACCAGTCTGGATGACACGTACGCCATGGGGGAGGGGCTAAAGCGAAGTGCGCTCAGTAGCTCCCTGCGTGACCTTTCCGAAGCAGGGCTCCACCTTTAGCGCTCATCATCTGATCCAGAGAGATCCTTCCTTTTCCTTCCAGGGGCAGTGCTCCAGACTCCCTCCTTGGGTCACTCTTTGAAAGCGTTCGGGTCAAACCATTCGCCCTGTCACCACACCCCACTCTAGTGCCCCGGCCATCCCATATCTCTTCAAACAGCTTTCAGAGAACATGATCAGCAAGCACAGACCCAGAGCTCAAGCAGACACCAGCCAACCCCTACACAGCAAAAACAGCATCTCATTTCATTCTGCCTACGGGGTGAATGTCACGAGATCAGaataacaatttatattttgcataaagattACCAAGGGCCATTAAGATGCATTACATTGTCAtggatttttttctgtaatcattttaaattattattatcgttattattattattattatcaaatagttaaaacataataaaacaaatgatatttCGGTTTATATCAGCAGACATTAAAACCAGTTACCATGctgcacaaatatttttacaaatacagatattttaaaaatgcatagtaGTTTGCAGTAATATggttctaataaaaaaaaatcacagttttgtatttatttattcatttattgaaaatagtGTATAACGCCACTAAAAATCTTACTGGTCCTAAATATGGGTTTTGTTGCctttatgcaaaatatgatataaaatttCCCCGACagacttcttggtttctttgaCGAATTTTGTTAGATTTGCCTCACGGAGGTTATGAAAACAAACGAAACAGTGGGTTTGCTTGTATTCAAACGTTGTGTTTTTGAGGCTGACATTCATTCAAACTAGCAGAATGACTAAGAAAGAGTGTTTGTTGTCTTAACGATCATTAAGTAATGTGCCAATGACCATGCACCCACTATGTTTTTCGTGTGTAGTACAGTAGTACAGTAGTGTAACTAAAACCATTGTAAGCAAAAAGCGATGTTATAGAATACTGTGTTCACAACTTTTTGAGAACAATACCTTGGTCAGTTTGAGTGGAAGTCCTAGAAACCTTCTGAAGCACAAATGCAGTATCATGTGGCACTTTGATCTGCTCGTCTACTTGTACAGCATCATATGATTCTTACAGACTTACAGGAAGGGTTTTGAGGAGATGTACAAACATGTTTGCATGCCTGGagtcgtttttttaaagaactgatttttttttttgtgtgtgttggacTTCTGAGGGCGAGTGACggaattatttttctattttttatgagttgtttttgtttgttttcaagtgCAATATGTTTGTCATGATGTTGCGGTCATGGCTAAAGCATCTTATTACTTCATCCAACAGGTGTTTTTACATTGAATGAAACGTCAAAGTGGTCGGCTACGCTCTAACTGTGATTTGTTATTGATGTTGTTCttgggtgtttatttattactgaaaataaagcagtgttaccatggcaacgaAGTGCAATCATGTAAAAAGTactcttctttttttacttttaaacaacCAGGAGATTGTTTCAGGTGAATATTCCGCTATATTATGCAAGCATCTGTATGTTTAGAGGAATGTGTATCTAGAGATGAACTTTTAGTCTGTGAAGTGAGGCAAGTGTAAAGATTGTTGTAAAGATGCGATCCGATCAGATATATaagctgatatttttttttcgaTTTGTTTTTCAGGATCTAAATTTTGTAAGCATGCATTCATGACCCCAAAACCAAAGCATAAGGTTTTCTTTTCAACCCATATTGAGTGCAATATCCATTCCGATGTACTAAAGTCAACACAAACAGACTAAACTAAAGACTAAACCAACTATGTTTATGTTCCTTGCGTTAAATTCAGTGAAGAAGTATTCTTTCTATTTGCTAGAAGTTATTGCACCGACTCCAAACCTCCCTTTTTTGTTCACGTGTAATATCCTGTTTTGCTTGCAATGAAGTAAAATGGGCTCGTTGATGTTGTTTCGTGTTGACCTTAAGacgaaaaatgtaaaacatcttGCATTTATAAAGTAACAGTTTCCAAAGATTGTTGTTctgcataaaatattacaacaacaTTGTGATATTTTGACAGATGAAGGACCGAAggtatctttcttttttgtccATCGTGACttaactgttttatttgacTTTACCTCTTTTCCCGTATTTCTTATCCTCTTTTTATGTCATGTGCTCAACCTGTTGTTCGGTGCTGTGTTGTGTGTTATTGCAAAAGATGGCATAAAGCGATCCTGTCCCACTATTAGCCCACGTAAAGAGGGCTTGTAAagaagtaataaatatattataggGGACCAAGTTAGGAACCATTTTGTATATAGTGTGTACAGTATCCTGTCTATCTTTAAAGAGGGATGTGTTTCCTGTCTGTTTTACGCTGTGTCACTGAAACAGACTGTTGAGATCCTCTGGATGTTTCTCTCCTCACAGGCTGCTATCACACCGTCCCAATCAACCACTAGGAGAAATAGCTCGTAATAAAGGGCAttggtttattttgttgttgtagaaCAGAGAATGCTTGTcttttgagattttattttacGTGATGGTTATCTATGTCAGCGTACAGTCGGTGTAAAACTCAAACTGTGACAACATTTcagaacataaaataaaacaattatatgatGCGTACAGTCGA

Function

GO: NA

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227875 lncRNA downstream 5845 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 23427 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 23427 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 38864 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 60601 841719 ~ 845010 (-) True G153893
XR_006247797.1 lncRNA upstream 1297 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 246502 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 246502 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 247723 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 430385 1389362 ~ 1393135 (-) True G153984
XM_043225490.1 mRNA downstream 150 903508 ~ 905461 (-) False gp9
XM_043225489.1 mRNA downstream 150 903508 ~ 905461 (-) True gp9
XM_043225136.1 mRNA downstream 10288 883192 ~ 895323 (-) False raf1a
XM_043225054.1 mRNA upstream 6697 965674 ~ 991444 (-) True nup210
XM_043224145.1 mRNA upstream 50926 1009903 ~ 1018911 (-) False LOC122328452
XM_043224144.1 mRNA upstream 50926 1009903 ~ 1018910 (-) True LOC122328452
XM_043224097.1 mRNA upstream 65680 1024657 ~ 1032351 (-) False ptpdc1b
XM_043224096.1 mRNA upstream 65680 1024657 ~ 1032351 (-) True ptpdc1b
XR_006247804.1 other downstream 119732 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 60795 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 97035 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 548721 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 548833 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 548833 1507810 ~ 1512329 (-) False smim29

Expression Profile