RNA id: XM_043225486.1


Basic Information

Item Value
RNA id XM_043225486.1
length 5389
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC122329272
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 905611 ~ 958991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCTCAGTCTCTGACTGCAGATCTAAAGCAGGATTTGCGTTTCGTCAGGTCTGTCGTGGGATTCCTCTCGGTGGACGTGACAGATAGAGAGAGTCTTGTGCTACGCTCGGGTCCAGGGATGGTTGAGTTGGCTGCGTTGTGGATGTGTGTTCTTCTGCAGATATGTGGTGTTTGCAGTGCAACTCAGAGAAAACACAGTCTTTGCTTGAACTGGAGCTGGACAGCTGTGTGGAGGGGAATGTTCAAAACAGTGAGCCAGGCCCATCCTTGGACACCAGCACAGGATTTGGCCATGGCCGGGGCCCGGTCACACACAGTTCTTCCTTGAGTCCGGACCAGTTTGAGAGCCCAGTGTATGGCCACAGCGTCCAGCCCGGTCCACAGCGCCCTCAGAGGCCCAAACTACAGCACTCCCAGTCCATCCTCCGCAAGCAGGCAGAGGAAGAGGCCATCAAGCGCTCGCGCTCCCTCTCTGAGAGCTATGAGCTCTCCACAGACCTGCAGGACAAGAAGGTGGAAATGCTTGAGCGTAAATACGGAGGCCGTTTCATAACCCGCCATGCAGCGCGCACCATCCAGACAGCTTTCCGCCAATACCAGATGAACAAGAACTTTGAGCGCCTCAGGAGCTCTATGTCGGAGAACCGCATGACTCGCAGGATCCTTCTGTCCAACATGAGGATGCAGTTTTCCTTTGAGGCGCCCGAAAAAACCCACAGCTCTGTTTTGGAGGGGAGGCAGATGTCTCTCCTGGACGACCTCAGCCAAGTAGGAGGCATGGTGCAGGCTGCAGAGATGGTCCCTGTCATTTTGGAAGCCCCGGAAACTCAAAACGACTTGACAGACACCATCACAGAGCTAGAAGACACTTTCTCCAGGCAGGTGAAGTCACTGGCAGAGTCGATTGATGATGCTCTGAACTGCCGTAGTCTGCACAAAGAGGAGACCCAGCCCGAGCCATCAATCTCTCAGGAGAGCAAGCATCAGGATAATGAGATCTGCGACGTGACGCTCTTCATCGATGAAGAGGAGCTCTCTCCGCTGGTCCAGCCATCCAGGGATGAGAAGCTGGACACGGAACCTCCTTCCCTCGAGCGCAAGGGGCCAGACTTACCCCTGCTGACCATCGAGCCTCCGAGTGACAGCGCAGCAGATACCAGCCACCTCACCAAGCAAGATTTCGCCCAGCCACTAAACGTTCACCAGCGCACAGTGGCTGGACCCCGTCCCAAACCAGCGCTGCCTGCTAGAGTCCCCTCGCTCTCTGGAGATGAAGAGCCGCTTCGACACCGGCAGCTGGAGAGCCACCTGGCCACCAACGGCAAACGGCAGAGCAAGTCTGAGTCAGACTTCTCAGATGGAGACAACGACAGCATCAACAGCAACTCAAACTCCATTGACACCATAAACTCAGAAACGTCATCCAGAGACGAACAGTGTCTCAGCAAACAGACGTACCACAAAGACACTCGCAACAGCTGGGACTCTCCGGCCTTCAGCAGCGATATCATGCGCAAGAGGCAGTACCGCATCGGCCTCAACCTCTTCAATAAAAAGGCGGAGAAGGGCATCCAGTACCTGACGGAAAGGGGCTTTGTACCTGACACGCCCGTGGGTGTGGCCCACTTCCTGCTGCAGAGGAAAGGCTTGAGTAGACAGATGATTGGAGAATTTCTTGGGAACAGACAGAAACAGTTTAACAGGGATGTCTTAGACTGTGTGGTGGATGAGCTGGATTTCTCAGTGATGGAGCTAGATGAGGCTTTGCGGAAATTTCAGGCTCAAATCCGGGTTCAGGGCGAGGCACAGAAGGTGGAGCGCCTTATCGAGGCTTTCAGTCAGCGTTACTGCATCTGTAACCCTGATGTGGTGCGTCAGTTCAGAAACCCTGACACCATCTTCATCTTGGCCTTCGCCATCATCCTCCTCAACACAGACATGTACAGCCCCAACGTCAAGCTGGAGCGCAAGATGAAACTTGAGGACTTCATCAAGAATCTCAGAGGGGTCGATGATGGCGAGGACATCCCTCGGGAGATGCTGGTTGGGATTTATGAGCGAATCCAGAAGAAGGAGCTCAAAACCAATGAGGACCACGTGTCTCAGGTGCAGAAGGTGGAGAAACTCATCGTGGGCAAGAAGCAGATGGGATCACTTCACCATGGCCTTGGATGTgttCTGTCTCAGGCTCATCGCAGGCTGGTGTGTTACTGCCGACTGTTCGAGGTCCCAGATCCCAACAGACTGCAGAAACTAGGGCAGCACCAGCGGGAGATCTTCCTGTTTAATGACCTGCTGGTGGTTACCAAGATCttccagaagaagaaaaactcaGTGACATATAGTTTCAGgcagtctttctctctgtatggGATGCAAGTGATGCTCTTTGAGAACCAGTTCTATCCAAACGGTATCAGGCTGACTTCAGCGATTCCTGGCGCAGACTTCAAAGTCCTGATCAATTTTAATGCTCCTAACATTCAGGACCGCAAGAAATTTACCAGTGATTTGCGAGAGTCCATCGCTGAGGTCCAGGAAATGGAAAAGTACCGGATTGAGTCTGAGTTGGAGAAACAGAAAGGAGTGGTCCGACCCAGTATGTCTCAGAGCATGTCGGGCCTGAAGAAAGAGAGCGGAAATGGCACAATGGGCCGCACCAGTCTGGATGACACGTACGCCATGGGGGAGGGGCTAAAGCGAAGTGCGCTCAGTAGCTCCCTGCGTGACCTTTCCGAAGCAGGGCTCCACCTTTAGCGCTCATCATCTGATCCAGAGAGATCCTTCCTTTTCCTTCCAGGGGCAGTGCTCCAGACTCCCTCCTTGGGTCACTCTTTGAAAGCGTTCGGGTCAAACCATTCGCCCTGTCACCACACCCCACTCTAGTGCCCCGGCCATCCCATATCTCTTCAAACAGCTTTCAGAGAACATGATCAGCAAGCACAGACCCAGAGCTCAAGCAGACACCAGCCAACCCCTACACAGCAAAAACAGCATCTCATTTCATTCTGCCTACGGGGTGAATGTCACGAGATCAGaataacaatttatattttgcataaagattACCAAGGGCCATTAAGATGCATTACATTGTCAtggatttttttctgtaatcattttaaattattattatcgttattattattattattatcaaatagttaaaacataataaaacaaatgatatttCGGTTTATATCAGCAGACATTAAAACCAGTTACCATGctgcacaaatatttttacaaatacagatattttaaaaatgcatagtaGTTTGCAGTAATATggttctaataaaaaaaaatcacagttttgtatttatttattcatttattgaaaatagtGTATAACGCCACTAAAAATCTTACTGGTCCTAAATATGGGTTTTGTTGCctttatgcaaaatatgatataaaatttCCCCGACagacttcttggtttctttgaCGAATTTTGTTAGATTTGCCTCACGGAGGTTATGAAAACAAACGAAACAGTGGGTTTGCTTGTATTCAAACGTTGTGTTTTTGAGGCTGACATTCATTCAAACTAGCAGAATGACTAAGAAAGAGTGTTTGTTGTCTTAACGATCATTAAGTAATGTGCCAATGACCATGCACCCACTATGTTTTTCGTGTGTAGTACAGTAGTACAGTAGTGTAACTAAAACCATTGTAAGCAAAAAGCGATGTTATAGAATACTGTGTTCACAACTTTTTGAGAACAATACCTTGGTCAGTTTGAGTGGAAGTCCTAGAAACCTTCTGAAGCACAAATGCAGTATCATGTGGCACTTTGATCTGCTCGTCTACTTGTACAGCATCATATGATTCTTACAGACTTACAGGAAGGGTTTTGAGGAGATGTACAAACATGTTTGCATGCCTGGagtcgtttttttaaagaactgatttttttttttgtgtgtgttggacTTCTGAGGGCGAGTGACggaattatttttctattttttatgagttgtttttgtttgttttcaagtgCAATATGTTTGTCATGATGTTGCGGTCATGGCTAAAGCATCTTATTACTTCATCCAACAGGTGTTTTTACATTGAATGAAACGTCAAAGTGGTCGGCTACGCTCTAACTGTGATTTGTTATTGATGTTGTTCttgggtgtttatttattactgaaaataaagcagtgttaccatggcaacgaAGTGCAATCATGTAAAAAGTactcttctttttttacttttaaacaacCAGGAGATTGTTTCAGGTGAATATTCCGCTATATTATGCAAGCATCTGTATGTTTAGAGGAATGTGTATCTAGAGATGAACTTTTAGTCTGTGAAGTGAGGCAAGTGTAAAGATTGTTGTAAAGATGCGATCCGATCAGATATATaagctgatatttttttttcgaTTTGTTTTTCAGGATCTAAATTTTGTAAGCATGCATTCATGACCCCAAAACCAAAGCATAAGGTTTTCTTTTCAACCCATATTGAGTGCAATATCCATTCCGATGTACTAAAGTCAACACAAACAGACTAAACTAAAGACTAAACCAACTATGTTTATGTTCCTTGCGTTAAATTCAGTGAAGAAGTATTCTTTCTATTTGCTAGAAGTTATTGCACCGACTCCAAACCTCCCTTTTTTGTTCACGTGTAATATCCTGTTTTGCTTGCAATGAAGTAAAATGGGCTCGTTGATGTTGTTTCGTGTTGACCTTAAGacgaaaaatgtaaaacatcttGCATTTATAAAGTAACAGTTTCCAAAGATTGTTGTTctgcataaaatattacaacaacaTTGTGATATTTTGACAGATGAAGGACCGAAggtatctttcttttttgtccATCGTGACttaactgttttatttgacTTTACCTCTTTTCCCGTATTTCTTATCCTCTTTTTATGTCATGTGCTCAACCTGTTGTTCGGTGCTGTGTTGTGTGTTATTGCAAAAGATGGCATAAAGCGATCCTGTCCCACTATTAGCCCACGTAAAGAGGGCTTGTAAagaagtaataaatatattataggGGACCAAGTTAGGAACCATTTTGTATATAGTGTGTACAGTATCCTGTCTATCTTTAAAGAGGGATGTGTTTCCTGTCTGTTTTACGCTGTGTCACTGAAACAGACTGTTGAGATCCTCTGGATGTTTCTCTCCTCACAGGCTGCTATCACACCGTCCCAATCAACCACTAGGAGAAATAGCTCGTAATAAAGGGCAttggtttattttgttgttgtagaaCAGAGAATGCTTGTcttttgagattttattttacGTGATGGTTATCTATGTCAGCGTACAGTCGGTGTAAAACTCAAACTGTGACAACATTTcagaacataaaataaaacaattatatgatGCGTACAGTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227875 lncRNA downstream 5845 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 23427 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 23427 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 38864 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 60601 841719 ~ 845010 (-) True G153893
XR_006247797.1 lncRNA upstream 34765 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 279970 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 279970 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 281191 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 463853 1389362 ~ 1393135 (-) True G153984
XM_043225490.1 mRNA downstream 150 903508 ~ 905461 (-) False gp9
XM_043225489.1 mRNA downstream 150 903508 ~ 905461 (-) True gp9
XM_043225134.1 mRNA downstream 10288 883192 ~ 895323 (-) False raf1a
XM_043225488.1 mRNA upstream 11853 937362 ~ 958991 (-) False LOC122329272
XM_043225054.1 mRNA upstream 40165 965674 ~ 991444 (-) True nup210
XM_043224145.1 mRNA upstream 84394 1009903 ~ 1018911 (-) False LOC122328452
XM_043224144.1 mRNA upstream 84394 1009903 ~ 1018910 (-) True LOC122328452
XM_043224097.1 mRNA upstream 99148 1024657 ~ 1032351 (-) False ptpdc1b
XR_006247804.1 other downstream 119732 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 94263 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 130503 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 582189 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 582301 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 582301 1507810 ~ 1512329 (-) False smim29

Expression Profile