RNA id: XM_043225490.1


Basic Information

Item Value
RNA id XM_043225490.1
length 1115
RNA type mRNA
GC content 0.47
exon number 2
gene id gp9
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 903508 ~ 905461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGcaaatgtttcaaatttaaatattttactttggTGGCATTTAcagtttgaaacattttgaattCATCATGTATAGCAAGCgtcattttcaatattttcaaactCATACTCGAGTGCAGATAAAAAGCACGTAGCTCAGAGAGCAGGGCATCTCTAATGTGCCGTTGGCAGATAGTCTTATCCTCTGCTCGCACAGGCCACGCGGTGATCACATGACTCACAATGCTTCCTGAGCTCTAACTGATCAATAGAAATAGTCTAAAACACAGGAAAAACTAGCCGTGCCTGTTTTAGTGCACCAAAATATTTGCGAGAAAAAACTATAGTGGATGTACGTCTCAGCTTAAAGCCAGGATGATTATTACGCTTCTGCACTTCTTGCTGTCAATCGTATGCTAAAAGGACTGGCCCTTCTCTTGTGCTCTCTCTTTGCACACGTCAATGCCCAGGCCTGCTGGTGCAAGACTTCACCGTCCCGAGGTCTGACGCTCAACTGCAGCTCTCAGGGCCTGAGGACCATCCCTCATCTTCCTGCAGAAATCACGGAACTCCTGCTGCAGGATAACCTCTTGACCACCGTGACCCCTGGGCATTTAGATGGGCTCCAGCACCTGCAGCTGGTCAACTTTTCCGGGAACCCCTTCCACTGCGACTGCAGCATCCAGTACTTAACACAATGGCTACAGAGGAATAAAGCCGTGTCTGTGATGCCACTGTGTACCAGTCCAGCAGAACTAGCCCAGAGGTCCATCCATGAACTCACTGATGCTGATTTCATGTCCTGCGTCTCTGATCACTGCTTTGGCTGGCTTTATAATGCCATCTTATGCGTCATGCTATGCTTTCTCATTGGTTTGCTGCTGTGGTGTGTGCAGCTTGCAAGAAACTCTACGTTTATTCTGGGAATTGATGAGAGACACACAGGCTTTGAGGCAGAATCTCTTCGATCGCTTAAACCCAAGCACAGAGTGAGGGTGAGGTACAGCATTGGGTCACTGAGCCCAGGGACCGATGACATGGACAAGCCTTTGTTCAACATGGACATCCTCCCTCAAATACTGGACGTCCTGAACAAGCAGCACAACATCAAGATTAAAGTACCATGAAAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227875 lncRNA downstream 3742 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 21324 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 21324 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 36761 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 58498 841719 ~ 845010 (-) True G153893
XR_006247797.1 lncRNA upstream 54813 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 300018 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 300018 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 301239 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 483901 1389362 ~ 1393135 (-) True G153984
XM_043225136.1 mRNA downstream 8185 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA downstream 8185 883192 ~ 895323 (-) False raf1a
XM_043225134.1 mRNA downstream 8185 883192 ~ 895323 (-) False raf1a
XM_043225135.1 mRNA downstream 8185 883192 ~ 895323 (-) False raf1a
XM_043225133.1 mRNA downstream 8185 883192 ~ 895323 (-) True raf1a
XM_043225483.1 mRNA upstream 150 905611 ~ 958977 (-) True LOC122329272
XM_043225487.1 mRNA upstream 150 905611 ~ 944006 (-) False LOC122329272
XM_043225485.1 mRNA upstream 150 905611 ~ 934264 (-) False LOC122329272
XM_043225486.1 mRNA upstream 150 905611 ~ 925509 (-) False LOC122329272
XM_043225484.1 mRNA upstream 150 905611 ~ 921586 (-) False LOC122329272
XR_006247804.1 other downstream 117629 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 114311 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 150551 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 602237 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 602349 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 602349 1507810 ~ 1512329 (-) False smim29

Expression Profile