RNA id: XM_043225492.1


Basic Information

Item Value
RNA id XM_043225492.1
length 1912
RNA type mRNA
GC content 0.53
exon number 11
gene id edem2
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4540302 ~ 4546406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACACGCATGCGCAGTACGTGCACTTCCTATTGTCACTGTTTGTAGTATTTGTGCGTATCCATGTCGCTTGAAATTGTTGTATTGTTTGCCTCTGCTCACATCTCGTTACTTCATGcttacttttcttttctccGCCGTTTTTTGCGCCACATACCTGTCTCCGATCGTCAGTAATGTTAAAGGCAGAGATTTTACTGAGCAGGAAATGTCCCATTACAGGGACAGAATAAAGTCCATGTTTTATCATGCATACAACAGCTACTTGGAAAATGCATATCCCTATGATGAGCTGAGGCCCCTGACATGTGACGGGCAGGACACATGGGGCAGTTTCTCCCTCACACTCATTGATGCTCTGGACACACTGCTGATATTGGGAAACCACACGGAGTTCCAGCGCGTGGCCACGCTGCTCCAGGACACGGTTGATTTCGACTCGGATGTAAATGCGTCTGTGTTTGAGACGAACATACGAGTGGTCGGTGGGCTCCTCTCGGCTCATCTTCTGTCCAAGCGTGCCGGGATGGAGGTGGAGGAGGGCTGGCCCTGCTCCGGACCCCTTCTGCGCATGGCTGAGGACGCTGCCCGCAAACTGCTGCCTGCCTTCCAGACCCCCACAGGGATGCCATATGGCACGGTGAACCTGCTGAGGGGGGTGAACCCCAGCGAGACCCCGGTCACCTGCACCGCCGGAGTGGGGACCTTCATCCTGGAGTTCTCCACCCTCAGCCGACTGACCGGAGACCCCGTGTTTGAGAACGTGGCTCGCAAAGCTCTCAGGGCCTTATGGAGAACGCGCTCCGATATCGGCCTGgtggGCAACCATATAGATGTCATAACCTCTAAGTGGGTGGCTCAGGACGCAGGGATCGGGGCAGGAGTGGACTCATACTTCGAGTATCTAGTAAAAGGGGCCATTATGCTGCAAGACGAGGAGCTGCTTTCGATGTTTCACGAATTTGATAAGTCCATAAAGAACTACACTAAGTTTGATGATTGGTATCTGTGGGTGCAGATGCATAAGGGAACAGTATCAATGCCTGTGTTTCAGTCTCTGGAGGCGTTCTGGCCTGGACTGCAGAGTTTGATAGGTGATATTTCCAGCGCCACAAAGACCTTCCATAACTACTACAGTGTGTGGCGTCAGTTCGGAGGACTCCCGGAGTTCTACAGCATTCCTCAAGGATACACGGTGGACAAACGCGAGGGATACCCTCTGCGCCCAGAGTTGATCGAGAGCGCCATGTATCTGTATAAGGCCACCGGTGACCCCACATTCATGCAGCTTGGCCGGGACGCAATCGAGTCGATTGACAAAATCAGCCGGGTCAACTGTGGCTTTGCCACCGTGAAGGATGTAAGGGACCACAAGCTGGACAACCGCATGGAGTCCTTCTTCTTGGCCGAGACCATTAAATACCTCTACCTCCTCTTCGATCCCGAAAACTTCCTCCATAACACGGGCACAGAGTTCGAGCTGGGCGGCCTGCAGGGCGACTGCATTCTCAGCGCGGGCGGCTACGTGTTTAACACCGAGGCTCATCCGCTGGACCCCGCCGCGCTCCACTGCTGCAGCCGATACCAGAGCGAGCGCGAGGAGCTACAGGACATACTCCTCAGCCTCTCAGAACCACTCAGGCCCGAGGAGACGCCCGGCGCGGGACGCTCGCAGGAGAGCATCGCACTGAAGCCGGGAGAGAGGAGGAAAGCTCGGGTGCTCTCCTGTCCCACGCAGCCCTTCAGTGCCAAACTGGCTGTCCTGGGACAGGTCTTCTCTGACAACTCTTGAACAGACAGCGTGTAAAGATGTAGATTATGTTTGTAATTTAACTTCGGAGagattaaatgttttctaaatatgcGTGGATTTTGCTCCactctttttattaaaaaaagttttagatgACAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10085 EDEM2; ER degradation enhancer, mannosidase alpha-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229356 lncRNA downstream 196435 4283769 ~ 4343867 (-) False G154895
TU229355 lncRNA downstream 254745 4283769 ~ 4285557 (-) True G154895
XR_006247789.1 lncRNA downstream 338162 4200644 ~ 4202140 (-) True LOC122328378
TU229337 lncRNA downstream 338164 4200882 ~ 4202138 (-) False LOC122328378
TU229221 lncRNA downstream 474773 4063965 ~ 4065529 (-) True G154787
TU229420 lncRNA upstream 477 4546883 ~ 4550218 (-) True G154933
TU229643 lncRNA upstream 133577 4679983 ~ 4680279 (-) True G155085
TU229677 lncRNA upstream 161259 4707665 ~ 4710337 (-) True G155092
TU229678 lncRNA upstream 166283 4712689 ~ 4713082 (-) True G155093
TU229682 lncRNA upstream 181448 4727854 ~ 4731140 (-) True G155096
XM_043224117.1 mRNA downstream 9966 4521926 ~ 4530336 (-) True si:ch211-117c9.2
XM_043224118.1 mRNA downstream 18522 4517836 ~ 4521780 (-) True trim35-39
XM_043225131.1 mRNA downstream 197663 4340087 ~ 4342639 (-) False LOC122328988
XM_043225130.1 mRNA downstream 197663 4340475 ~ 4342639 (-) True LOC122328988
XM_043225423.1 mRNA downstream 203277 4330715 ~ 4337025 (-) True ptges3b
XM_043225297.1 mRNA upstream 4623 4551029 ~ 4566274 (-) True prpf6
XM_043224062.1 mRNA upstream 265382 4811788 ~ 4815325 (-) True naa10
XM_043224153.1 mRNA upstream 269416 4815822 ~ 4827179 (-) False g6pd
XM_043224155.1 mRNA upstream 269416 4815822 ~ 4827119 (-) False g6pd
XM_043224156.1 mRNA upstream 269416 4815822 ~ 4827111 (-) True g6pd
XR_006247892.1 other downstream 345304 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 345306 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 634410 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1094338 3436779 ~ 3445964 (-) False LOC122328836
TU228728 other downstream 1588674 2942238 ~ 2951628 (-) False G154445
TU229703 other upstream 285412 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 908011 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 931508 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 2184445 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 2220202 6766608 ~ 6822978 (-) False rps21

Expression Profile