RNA id: XM_043225501.1


Basic Information

Item Value
RNA id XM_043225501.1
length 5377
RNA type mRNA
GC content 0.49
exon number 21
gene id sulf2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5233697 ~ 5354895 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGAGGCAGGCGTGTTTTAACAGATGGCTCTCGCCGTCCCGATTCAGCCAGCTCACTGCCTCTGGTACAACtcgaacagagagagagagagagagagagagagagagagagagagagagagagagagagaacaaggtAGTTCAGGAAATTGAAACCACTTCAGTTTgaacttcagttttttttaacactcgTCTCTTTTAAAACTTTCCGTCCagcctctctcgctctcacttCTGTGTTGACAGTCGCTTGAAAGTTTGACAAACTTCGCAGCAATGCGGTGACCGCAGCGCAACAGGGTGCAGGAAGACAGCTATCAGAACAAGAAGAGGAGAAAGTGCAGCGGGACAAtaccccccccacacacacacgctcccgCCTGGCCGGTTTGGGGTCTCCGCCGCAGGACAGAAGGGGACAAACTGCCACCTGCCTCCCCTGCAGCTGTGTGTGAGAATTAAAAGTCAAGTAGAAGAAGGCCTGGTGGTGTGGACCCTGCAGTGTATGCTGTTTGTGCATCTCCGCTGGTTGTCTGGACAGGAAATCATCACCTCTTTGTCAGGTGCCACGAGGTGAAGTCAGTATAGTGTGAGCGGGAGCCCCGAGATGGCGACGCAGGGCCTGGGGGCCCGGCTCTTGGTGCTGCTGGCCGTGTTGGCGGTGGCTCATGCCTCCATCTTCCTGACCAATCAGAGACTGAAACCTCGGTTCCAGCGAGACCGGCGCAACATCCGCCCCaacatcatcctcatcctcaccgATGACCAGGACATTGAATTGgGCTCCATGCAGGTCATGAATAAGACCCGGCGGATCATGGAGCAGGGTGGAACGCACTTCTCCAACGCGTTTGTCACCACACCCATGTGCTGTCCATCACGCTCCTCCATGCTGACGGGGAAATACGCCCACAACCACAACACCTACACCAACAACGAGAACTGTTCTTCTCCCTCCTGGCAGGCCCAACACGAGCCGCGCACTTTCGGAGTCTACCTAAACAGCACTGGCTACAGGACAGcATTCTTTGGGAAGTATCTGAATGAGTATAACGGTACTTACGTTCCTCCCGGATGGAGGGAGTGGGTCGCCATGGTGAAGAATTCCCGCTTTTATAACTACACTCTGTGCAGGAACGGTGTCCGAGAGAAACATGGATATGAATACTCAAAGGACTACCTGACAGATCTCATAACCAATGACAGCATCAGTTACTTCCGCATGACAAAGAAGATCTACCCTCACCGCCCCATCATGATGGTGATCAGTCACGCTGCCCCTCATGGCCCGGAGGACGCGGCCCCTCAGTACACCACTGCCTTCCCCAATGCTTCACAACACATAACGCCCAGTTATAACTACGCCCCTAATCCAGACAAACACTGGATTATGCGCTACACCGGCCCCATGAAGCCCATTCACATGGAGTTCACCAACATGCTGCAGCGCAAGAGACTGCAAACGCTGCTGTCCGTGGATGATAGTGTGGAGAAGATATACAACATGTTGGTAGACACCGGGGAGCTGGACAACACGTACGTGATCTACACGGCTGACCACGGATACCACATCGGTCAGTTCGGACTGGTCAAGGGGAAATCCATGCCCTACGAGTTTGACATCAGAGTTCCCTTTTACATCCGCGGCCCAAATGTGGAGGCGGGAGGCATCAACCCCCACATCGTGTTGAACATAGACTTGGCGCCCACCATCTTGGACATCGCAGGGATGGACGTTCCCCCAGACATGGACGGCAAGTCCATCCTCAAGCTCCTGGACACAGACCGCATGATGAACAGGTTCCAGCTCAACAAGAAAGGAAAAGTGTGGCGGGACTCGTTCCTGGTGGAGAGAGGAAAACTGCTGCATAAAGTGTTGAATGATGGGAAAGATGTGGCCCAGGAGGAAAACAACCTGCCCAAATACCAGCGTGTTAAAGACCTGTGCCAGCGCGCAGAGTACCAGACGCCATGTGAACAGATCGGTCAGAAGTGGCAGTGTGTTGAAGACGCCACGGGGAAGCTGAGGTTGTCTAAATGCAAAGGCATGGCCAGTCTGTCTGCAGTGCGAAAGCCGTCTGTGTCCAGCATCAAATCGCAGATGTATCTGCAGAGCATGAGCGCTGATGTCGGCGTGAACTCGGAGCCTCAAGGCTGCAACTGTGAACCCACCGGCTACAGGCTGAGCACCTTCTCCAAGAATAAACTGTTCTCCAAAAAGAAACTGAAATCCCTGAAGAGCTACTCCAGGAACCGCTTCGCCCGTGCTGTTTCCATGGAGATGGGAGGAGACCTGTACGCCGTGGACCTGGATCATGAATACAGGCCCCCGGGCCCCGGAAACCTCAGCCTCAGGCAGAACACAGCGGATGAGGACGAGTTCAGCGGCGTGGGACCCACTGCAGTCAGCCAGACCAGCAACAGCCTCTCTGTACCCTCCTCTATTAAAGTCACTCACAGatgttCCATTCTGGCCAATGATACAGTAAAATGTGACGTCGGTTTGTACAAATCGCTGCAGGCGTGGAAGGACCACAAGCTCCACATCGACCACGAAATCGAAACACTCCAGACGAAGATTAAAAACCTTcgtgaggtcagaggtcacctgAAAAAGGCTCGACCTGAAGAGTGTGACTGCAACAAATATTAtTACAAATCCAAGTACAAGAGTAAGCTGAGGAAATACAAAGCAGGAGGTGTCCATCCGTTCAGGAAAGGACAGGAGAAGGATAAGAAGGCCTGGTTGTTGTTGGAACAGAAGCGCAGGAAGAAGCTGAGGAAGTTAATGAAGCGTCTGCGTAACAATGACACCTGCAGCATGCCCGGCCTCACCTGCTTCACACACGACAACCAGCACTGGCAGACCGCTCCATTCTGGACatTGGGGCCGTTTTGTGCGTGCACCAGTGCCAATAACAACACTTACTGGTGCATGAGGACCATTAATGAGACACACAACTTCCTGTTCTGTGAGTTCGCCACTGGATTTCTGGAGTATTTTGACATCAACACGGATCCGTATCAGttggtGAATGCAGTGAACACACTGGACCGCTATGTTCTCAATCAGCTGCATGTTCAGCTCATGGAGCTCAGGGGCTGTAAGGGACACAAGCAGTGTAACCCTCGCACACGCAGCCTCGACTTCgAGGACAGATATGGGAAGGATGGGAAGGATAACTCATGGAATGAGGGCGTCCCGGAAGACACCAACATGTTTCCCGGCGAGCCGAACTGGTCCGAACTTGAACCTTTGTACAGACTTGATGAGCACGCCTACGATCTCAAACTCAACTTCACCCTCAGCCTCGAGGACTGGGCTCATTTCAGCCGCTCCGTGGACCACATGTTCACGCTCCTCAGCAACGACAACCAGCCGTACTCTCCTCGCCGCCCTGAGGACGGACAAACAGGAAGAGGCCACGCCCTGGTGTCCTCCAGCCAATCCGCTTCAGCCATCTACCTGACCACTCTGGCCACGCCCGCTCTTTTACTGAAGGAAGCTGGCGCTGAGGTCTTAAGAGACGCTTTGGGGCTAAACCAAGTGGAGCgtccctcttcttcttctccaccTTCGCCTTCATCACATCCCGTGAGACCTGCAGGGTCACAGGTGGACAGTGAGGGGCTCGCTGGAGAACTGAAAGGGGACAGGCAGAGAGAAGGTAGGGACGGtgatgaggaggaagaggaggagttTGTTCAGAGACGGACAGGAAGGTTAAGCTCCGCCCACTGTGACTGCAATGACATTTTGCAGGAAACGGTTTGACTCTCACGTAACGTTCCTCTCTCACGCCATCCCTCCTCACTTCTATATTTGACGGAAGTGAAGAAAGAGGACGTTTAATGGCAGCGTACAGTCCTTcggtttgttttcttctcccATGTGTTCCCTTGCTCCATTATCGACTGGCCTCAGAAGCGCGGCGACTTCCAGCAACATTTCCATCTACAGTTGGACCGTTTTCCCAACTTGTCCATGAGATCGGCTAGGCTTTGAACAGAgcacatttttgtcttttaactTAGATTCTTTACTCTGTTTtcattctttcatcttttttacgGGATTTGGGAAGGTtggggttaaaattaaaacggCAGTACAACTTCACAAGGATTGAGTTGTTTGACCATTCATACTTGATTCACTTTGAAACCGGTTTCGCACCAtaatgcttttctcttttttggtgTCTCCAGAGGGTGTCTTACTTTGTGGGACAGTGTCTTTTACAGCCTTATAACTTCACTGAACAACACCTCAAACAGGTCAATGAtgaatgtgtctgtgtgttgtgtgagtGTAAACACACTGTATCTGAAGTCAAAAGTCATTTTGCGTGTGATAAAACTAAGCACTTTGTGTGCTCTCAGTAATGTTATAGCATTATTTAGTTTAAGCTCAAACATTGGTCAGTTTTTTGTccaaaatcatttacatttcttacaATATCTTGCCGTTTTTGCAGCAAAATGAGTTAACCACCGAACGAAAACGAAAGAAAAAACGTTAATTTGGTGCATCGCCATTATTCACATTCGACACAATTATGTATGTTTTCCCCAAGCGCATTGAGAAAGAAATTTTGATGTACCGAACATGCCACGTCATATTTTTAACCTTAGCTTATTCTTAAAACTTTTGCTATACACAGTGCTACTAATATCAGAGCAAATATATGGAATGGATGTATGTATTTTAACGTGTTTGCAATGTAAATGGTTAaaggatattttttattacacatcTGAAGCTAAACCGACCGCAAGACATAAAGACTTCACTCCAGCGTCAGGTTTATTTATGCAGCATATTTTTAACAGTTCTTTAAAACacatattcagtttttttttttttttatggtgacATATCTAagattgtttaaattattaatccACCTTCCTGATGTATTTCATCCATCCCTGTTTTGAGATCAGCTTGGTTCTTTGATTATTATGACTGTGTCGTCTCACTCTGGGATACTTCATCAGTACGGCTCTCTATTGTGTTCACATACATGTATTTCATATCAGTGTGCAACATCCGCCCCTCACCTCTCGTGGCTGTACTAAAAGCAGTTTTGTCTGAGATTGTGTatggttgttttaaaaaaaaaaaaacgccataattattgtaaaaatgtactgtgCATAAACTGGAGGATAGGAGACAACTCggagaggaggagaaatgttCCTTTGCCACTTCCAAAGGGATGGCTGTTTTCGGAATAGGagtttaaaaaatggttttaacaaAGTCTTGTACAGTTCTATAGATTTATCATAcctatatttttgttttggtttaccAGTGGACATTTGATAGTGCTCATTACTTTGTGAATAAAGTGTTGAATGCCCAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0009986 cell surface cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229770 lncRNA downstream 120733 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 136567 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 144600 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 145751 5085142 ~ 5087946 (-) False G155153
TU229708 lncRNA downstream 290680 4908918 ~ 4943017 (-) False G155112
XR_006247896.1 lncRNA upstream 75651 5430546 ~ 5431524 (-) True LOC122329300
TU229897 lncRNA upstream 137836 5492731 ~ 5496474 (-) True LOC122329188
TU229905 lncRNA upstream 170146 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 299123 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 460416 5815311 ~ 5919163 (-) True G155254
XM_043224028.1 mRNA downstream 929 5170965 ~ 5232768 (-) True arhgap46b
XM_043224029.1 mRNA downstream 24455 5170965 ~ 5209242 (-) False arhgap46b
XM_043224030.1 mRNA downstream 40891 5170965 ~ 5192806 (-) False arhgap46b
XM_043224034.1 mRNA downstream 64369 5153961 ~ 5169328 (-) False phf20b
XM_043224033.1 mRNA downstream 64369 5153961 ~ 5169328 (-) False phf20b
XM_043225509.1 mRNA upstream 82623 5437518 ~ 5443533 (-) True eef1a2
XM_043225522.1 mRNA upstream 89872 5444767 ~ 5449595 (-) True LOC122329294
XM_043225524.1 mRNA upstream 89873 5444768 ~ 5449593 (-) False LOC122329294
XM_043225523.1 mRNA upstream 90104 5444999 ~ 5449598 (-) False LOC122329294
XM_043225525.1 mRNA upstream 90104 5444999 ~ 5449598 (-) False LOC122329294
TU229703 other downstream 399177 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1038699 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 1038701 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1327805 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1787733 3436779 ~ 3445964 (-) False LOC122328836
TU229887 other upstream 99522 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 123019 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1375956 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1411713 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1418683 6773578 ~ 6822978 (-) False rps21

Expression Profile