RNA id: XM_043225508.1


Basic Information

Item Value
RNA id XM_043225508.1
length 2493
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC122329283
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5817641 ~ 5824247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCAGGGATGTTTATGCATTTACGGAAGACACTCCAAAAATTAGTGTGAGAAAGAAATCCTCTGATGCATCCAGAGTGGAAAGCAGTCCACTAAGTAAACCTCAGCCTCCCTCCAAGTCGGCTAAAAGACATCATCTTACAAAGGCGCCCAAGGCAAATGAGAAGAAAAAGCTGTTCAGTGATACGGACACAGACAACATGACGGAGATCAGCTGGTTAAACTCAGCCAACAGGAAACCCAAGCCCAAAGTGGCAGACTACAGCAGGCAGCCGGTTAAACCCATCTTTCCACCAGCTGACACTGCATttaaatcaCCATATACGCCTTTGCCTTCGCCAAAACCAGTGAAAGAACAAATCAAGCCAAAACGGAAGAGACAGAAGAAAATGGCTGAACACGAGGATAAAAGGCAGCCAAGCATCAATAATAAGAAAACCACAGGACGACCGCAAAGAGCTGCAGCCTTGACCAGAACCTACAGAGAGACGTCTGACTCAGACGACCAGTCCAGTCTGTCAGAGAGTGAAAAAGCACCAGCCCCTAAGAAAAAGGCTGTTTGGCGAGCAGCAACGCTCCATGAGACTGTCTCAGCCAAAGCCGCAGAACAGGGgggaataaaacagaaaacctCTGTAGACATAGCCAAACTACAAAATGAGAAGAACGCACAGAAAAAGGCAGATAAAGTCTTTGCAAAGAGTCTGGGAGGTCAGAGGAACGATAAAGGCAAGAAGATGTGTAGTCCAGAGCATCTTGCAGCGAAGAAGACGTCATCTGCTCAGGGGTCAGCCAGAAGGCAGAAGGAGTCTTGGGCAGCGAGATTATCTTCCACATTCGCCTCGCCTCCCTCCGTTGAGAAGATGAGATCGGGCGAAAAGCTAAAAACCAACGTGAGATCCGGCGCTACACCTCTCCGTTCTCTGTCCATCTCTCCAATCGAAGCCGACTCTTCTCCACTACAGCCTCTCAGTTCCCTCAAAGCCTCCTCTCTCTGTAAAACCCCAGGGAATAAAGCTGCTGTGAAACAGCCATCTCGCACCATAACACCTGTTTCCACAACCTCAAGAGGCTCTAAACGGATTCCACCTGCCGCACAGGTTGAGCCGAGTCCAGTCGACTCTCCAGACTTCCAGGAGGAGCAGAGAGGTGTCAAGAACAAAACCAGCCCAGCATCGTTTGAAAGGAGGTCCATCATTTCTGTGACAATGAGCCAATCTTCCCACGTATCTGTAAGCAACAAGTTAGAGAAAACACCAGCAAGCCAGAAAGGAAGTAAGGTTGAGGGACTAGAATTTAAGTCAGGTCCAACGGCCATCCTCAAGCATCTCACCCTGAGCCACTCCGCTAGTCTTTCAGAGAGAGATGAAAGTGAGGAGGACAAAGAGAATAAGGCTCCTTCTCCCTCTCAGCTAGCTCTGAAAATGAAGCCTAGAAAGCTGTTTGTGCCTACTAATAAATCCTTCACTCCTAATAAAGGCTCCAATGCTAAACCTCTGGTGAAGGATCAGAGCAGTtcagaggaagaagaggaggacaTAGTCACAGAGAAtgggagaagaaagagaagttACAGGGGAGGCCTGAATAAAAGGGCCAAGGAAACGACTATATCCATGGAGACACTGTCATCCTGCACAAGGTCCAGCTACAGACATGCCAGCGAGGAAGACACAAACCCGACCCAGCCTGCTCAGCAGGTGGGCTTTATCTGCCATCAGTTCAGCTCAGAGCTTAAGAGAAAGATCAAGAATCGCTGCAGGACAATGGATCTTTACACCAGGCAGACTTTGAAGACTTTAGGGCAGCACATGTCATCCGTCAGTGTCCAAGTGCACCAGTACAGTACTCAGAGGCTGGAGAAAGTCAAACAAGTCCTGTTGAGCGAAATAGCAAACCTGGAGCAAGATGACACTGTTTTGAGAAGCATGGAGGAGGAATTGACGACTTACTGGGGGAATCAGACCTTGGCCTTCCATGCTTACCAAGAGAAAGGAACCAAGAGATTACAGGAGCTGAAAAGCGCTTTTCAGACCGACGTGTGTGAAAGTCTAGAGTATGAGAAAGAGGTCTTCTCTGTGGAGATGTCTTTGATGAAGAAGAGCATGAAGTCAGTTCAGGAGCGTTTCTTCAAAGAAATACACGAGGAAGAGTTGACGAGTGTGAGAAGAGGTCTGCAATCATTGTTCTTCCCTGATGCATCGAGGTTCTGACCTGAGAGAAAAACATCTACTGTTCTGAAACCCGTTTGTAAGCTTAGAGATATTACTGttatgttcttttaaaatattattactcgAAAGGTTGAATATTTGCACTTTCTAGTCTCCTTGAAACAGTGGTTGCCTGTACATAGTTTTTACATATTTGCTTGtggtttttaatatgaataatgaatagTTGTTTAAAGCAAACAAGTAAATGTTGTAGGCAATATAAGAACAAACGCGTTTATTTCTAACATCGACTTTAGATGTATGTGCGCAGAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247895.1 lncRNA downstream 154685 5654018 ~ 5662956 (-) True LOC122329299
TU229905 lncRNA downstream 269933 5525041 ~ 5547708 (-) True G155238
TU229897 lncRNA downstream 321167 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 386117 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 704677 5111844 ~ 5112964 (-) True G155157
TU230003 lncRNA upstream 366850 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 524760 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 660407 6484654 ~ 6484915 (-) True G155413
TU230119 lncRNA upstream 661192 6485439 ~ 6488844 (-) True G155391
TU230121 lncRNA upstream 664377 6488624 ~ 6499749 (-) False G155391
XM_043225521.1 mRNA downstream 91378 5722488 ~ 5726263 (-) True LOC122329292
XM_043225530.1 mRNA downstream 304253 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA downstream 304253 5509695 ~ 5513388 (-) False LOC122329296
XM_043225528.1 mRNA downstream 304253 5509695 ~ 5513388 (-) True LOC122329296
XM_043225520.1 mRNA downstream 308081 5505406 ~ 5509560 (-) True LOC122329290
XM_043225413.1 mRNA upstream 28862 5853109 ~ 5858747 (-) True LOC122329222
XM_043223967.1 mRNA upstream 35664 5859911 ~ 5865217 (-) True LOC122328332
XM_043225202.1 mRNA upstream 44879 5869126 ~ 5872179 (-) True sac3d1
XM_043225204.1 mRNA upstream 48047 5872294 ~ 5876865 (-) False haus8
XM_043225203.1 mRNA upstream 48047 5872294 ~ 5875807 (-) True haus8
TU229892 other downstream 337822 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 362594 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 983121 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1622643 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 906604 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 942361 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 949331 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 949331 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 949331 6773578 ~ 6822978 (-) False rps21

Expression Profile