RNA id: XM_043225512.1


Basic Information

Item Value
RNA id XM_043225512.1
length 1672
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC122329287
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5456665 ~ 5460124 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTGTGATGAAAAATAAACGTTCAGTGCCGCTCCTGCCTGACAGGTGGCGCTGAACGCTGCTCGAATCCGCGCTTCAAACGACGAGGAAGAAACTCGACAGAGCGCGCGGCGGAAACGACCACGGACAGTAAGATCTCGCTCCGAGCGAATAATGGCATCCAAAAAGCCGTTAAATATACGTAGAGTAGAGAAAACCGCTTCAAGCGACTCAAAAAAtTTATCCACTGAAAATGAAGGCAGCGGAAATAACAGCGGTGCGGAGGAGGAAACCAAAGgcacGTTTGTGAAGCCTAGATTCATGCAAACTGAAACAAAGGCTCCTACAAAGGGCAGTGTACAGCAGCAGTCAGTGCTGATGCCACCCAGACCGTCCTCTCCCAGAGCGAGCAACCCGCGAAAGCCAAGGGAAGGCATACATCCGAGACGAACAATAAGCTCTTTAGCAGATAATGACTCTGCATTGGTCGCAAGCATTCTGGAGTCCTCAAATGTGGGAGGAAGTGTCTTTCAGTCGACTGTTTTGGATGGTCACTGCATTCGTCCAGATTTTGATGTCTCTGTCATTAATGATAAAGTTGCACAGCCAAACACAGTGGACCCTGATAACGAGGAAAGGGACATAGCGACGGAGACCTTTATTTTGGCTTTCCTCACTGCTAAGATTGAGCACAACACCGAAAAATGTAGAGAGGAGGCTGAGAGGAACATTCTGGCTGTGATGGAGAAAGAGCAGCAGTTATCCGCTCAAGTTAGTCGCAAGAAACGCCAGTATCTGCTGCTGGAAAAGCAGAAACAGCTGAACAGTCTACTGGACTTACAGATCGAGGCTTTAGGTCCCGTTGCTGCTGAAGTAAACACATTTGCAGAGGACTACGAGTCTTTTGCCTCCGCCATTGATGCCACGAGACACAAGCTTCCTGTGAAGAACGTGGACGCTGGAGAGGACGCAGACCAGTTTTTAGaAAAGGCTGTTGAATCTCTGAATCGGAGTGAGCGTGTCTTGCAACGTTATACTGAAGACGTTTCCACTGATTGTGAGGCTTCAAAACGCTGTCTCAAAGAGATGGAAGACACGGCTAATGAAATCAGCCAACAGGTGACGAGGACTTTTTCTGATCTTCTAGAGGTGTCCTCGCTTGTAAGCCGAGAGACGGTTTTGATCAAGCAGTCACTGGAGGAAGAAGAGATCGGACCGAGCACAGCCCAGGCTCTCTTCTGTCCCTCTGCGCTCTGATACATGATCACATCTGTTTACAGTTTAATAGATAGCGTGTTAATAATCAATGGATAGTAggtatttatttcaaacattgtGACTAATAGCTATGTGTTCGATCAGCCCGGTCGTGCagtgtatttaataaaacaacaaccatattaattcatgtgtgttataattagtttgtttaaattaaaagaagagCCCAAACAGTATGTATCTGTGTATGTAGATAGAGAAGCATGTGATACTGTATTCATATTCTGTTAATAACTGTCTTGCCCAGTGTTCATTTGCACATTTCTACATtggacaaaaaaacaagcaaaaccgTTTTCAGTCATGAAAACATGAAAGGTCCCATGTTcaaaaaaagtagattttattattataatttattaacggtgatttgattaaatgttcTTAACATAATAAATCTAAGAGaaccctt

Function

GO: NA

KEGG:

id description
K16591 HAUS8; HAUS augmin-like complex subunit 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247896.1 lncRNA downstream 25141 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 343701 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 359535 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 367568 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 368719 5085142 ~ 5087946 (-) False G155153
TU229897 lncRNA upstream 32607 5492731 ~ 5496474 (-) True LOC122329188
TU229905 lncRNA upstream 64917 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 193894 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 355187 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 730973 6191097 ~ 6191320 (-) True G155308
XM_043225523.1 mRNA downstream 7067 5444999 ~ 5449598 (-) False LOC122329294
XM_043225525.1 mRNA downstream 7067 5444999 ~ 5449598 (-) False LOC122329294
XM_043225526.1 mRNA downstream 7069 5444999 ~ 5449596 (-) False LOC122329294
XM_043225522.1 mRNA downstream 7070 5444767 ~ 5449595 (-) True LOC122329294
XM_043225524.1 mRNA downstream 7072 5444768 ~ 5449593 (-) False LOC122329294
XM_043225511.1 mRNA upstream 17717 5477841 ~ 5479822 (-) True LOC122329286
XM_043225385.1 mRNA upstream 24088 5484212 ~ 5492933 (-) False LOC122329188
XM_043225520.1 mRNA upstream 45282 5505406 ~ 5509560 (-) True LOC122329290
XM_043225530.1 mRNA upstream 49571 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA upstream 49571 5509695 ~ 5513388 (-) False LOC122329296
TU229887 other downstream 1618 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 622145 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1261667 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 1261669 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1550773 3894966 ~ 3905892 (-) False lad1
TU229892 other upstream 17790 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1270727 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1306484 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1313454 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 1313454 6773578 ~ 6822978 (-) False rps21

Expression Profile