RNA id: XM_043225522.1


Basic Information

Item Value
RNA id XM_043225522.1
length 896
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC122329294
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5444767 ~ 5449598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGAGTAATGTCCGGGTGTgttgtatctgtgtgtgttgtcGTGTGTTGATGAAGCGGTGAAGCGTCGCTCAGAGTCGCTGCAGAAACATGGGGGAAGCCGAGGCTGTGCCGTCCGACGAAAAACAAGCAGAAACCGGCATCTGTACCGCCGAGGAATCGATTGTATGGAGCCAGGAGGTGGAAGTGTGTCTTTTTCACGCAATGCTGGGACACAAACCCGTAGGAGTGAATCGACATTTCCACATGATCTGTATTCGCGATAAGTTCAGCCAGAACATCGGCAGGCAGGTGTCCTCTAAAGTCATCTGGGATCACCTGAGCACCATGTATGACATGCAGGCGCTGCATGAATCAGAAATACTCCCGTTTCCAAACTCTGAGAAGAGCTTTGTTCTGCCTGAAGAGATCATACAGGATGTCAAGGAAGGTAAAGTGGGATCTGAAGAAGACGTGAAGGAGGAGTTCAAAGAAGAAAGTGACCCACCTGCAACCCACGAAGAAGGTCTGGGTCCCAGTATGGCTGGCCAGGATTTTGCGAGCAATTGCTCCGTGAAGCTTTTGGAGAGGTCGGACAGCGGGcgcgagaaagagagacagcGGGCAGAGAGGGGGGGCTCAGGTGAGACGGGCAGCGGGTCGAAAGAATCAGCCGGggaaaagaggaagaggagtcGAGCCGTGGAAAAGGTGATGAACTCCAGCAACCCCTCCAGCCCTGGGGGAGCCAAACGCCGCAGGACGTAGCCGCAGCTTGCAGCGGGGCGATTCGGGACATCAGACATTTGGAAAGAACTGACGGAGGAAGGCGTAGCTAATATTGGTCTCGCTACAGCCAATGCGAAAGTGAAATGGCGAGCAGGGGATGTGTGATGTTCGTGTCTGCGTTATCTCATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
K11343 MRGBP; MRG-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247896.1 lncRNA downstream 13243 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 331803 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 347637 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 355670 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 356821 5085142 ~ 5087946 (-) False G155153
TU229897 lncRNA upstream 43136 5492731 ~ 5496474 (-) True LOC122329188
TU229905 lncRNA upstream 75446 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 204423 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 365716 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 741502 6191097 ~ 6191320 (-) True G155308
XM_043225509.1 mRNA downstream 1234 5437518 ~ 5443533 (-) True eef1a2
XM_043225506.1 mRNA downstream 89872 5235756 ~ 5354895 (-) False sulf2b
XM_043225505.1 mRNA downstream 89872 5235756 ~ 5354895 (-) False sulf2b
XM_043225507.1 mRNA downstream 89872 5235782 ~ 5354895 (-) False sulf2b
XM_043225502.1 mRNA downstream 173448 5233697 ~ 5271319 (-) False sulf2b
XM_043225512.1 mRNA upstream 7070 5456665 ~ 5460124 (-) True LOC122329287
XM_043225511.1 mRNA upstream 28246 5477841 ~ 5479822 (-) True LOC122329286
XM_043225385.1 mRNA upstream 34617 5484212 ~ 5492933 (-) False LOC122329188
XM_043225520.1 mRNA upstream 55811 5505406 ~ 5509560 (-) True LOC122329290
XM_043225530.1 mRNA upstream 60100 5509695 ~ 5513388 (-) False LOC122329296
TU229703 other downstream 610247 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1249769 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 1249771 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 1538875 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1998803 3436779 ~ 3445964 (-) False LOC122328836
TU229887 other upstream 4822 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 28319 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 1281256 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1317013 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1323983 6773578 ~ 6822978 (-) False rps21

Expression Profile