RNA id: XM_043225527.1


Basic Information

Item Value
RNA id XM_043225527.1
length 2450
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122329296
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5509695 ~ 5513388 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaatatctttaaCATGCAATCCTAGCTTTTTCATTTACTTCCGTGCAGCAAAGTAAATAACTAATGCATTAATGAAGTGCAGTTATTACCTCAAGTGCTAATTTGGTCAGGTCCTTTCTGtcatataaatcattttattgtacGATCGTCATATCGTCCTCTTTACCGAGCGATGTTTTGGATGTTGTATTTCAGGGCCGATGTTTTGAAGCATGCTTTGGCGGCACATGTCCCAGCGGCCGAGAGCGGAGCTTTAGCGGGGATTAGACACTGGAAACAGCGTCCAGGTGAACCACCGAACACGTGAAAACCACAGCCAACAGAACGTGACTGTGATACCTGCTGACTTCTGACAACTCTGTGACTTTTATAGGGCTGCCATACAATTAATAGCATCCTAAATTGATCACTTACCGTTGATAAATAGCGATGCAGATTCGCCCGTTCCCCGTGGAGATGTCACGTTGATCCCCGGCCTGAAGACCCTCCCTCCACCGCACCGTCTGATAAGAGCCACGCAGATCATTTGGGATTAGCGCGGGTCTGAGAGCACACCAGGAGCCCGGTGAAGATGAGGATGCTCTTCTGCGGCGTGCTGCTGGTGCTGGGAGGAGATGTTCTCCTGGCCTGCTCTCTGAAGAACTACACGCTGTACGTGGAGAGACACGAGTGCGGTCACTGCATGGCCGTCAACACCACCATGTGCGGCGGAATGTGCTTCACGCAGgacACAAACGTGCAGGGATTCGTGGGCAAGCGTTTTCTGATTCAGAGAGGATGCATGCATCGTTCCGTGGTCTATCATTCTGCTAAGATGCCCGGCTGTCCGCTCCACATCGACCCGCGCTTCTTCTATCCGGTGGCTCGCCGGTGTCACTGCACAAAATGCGACACCGTACAGAACGAGTGCGTCTACAAGCCAAAACTAACTCCTGCAAAGTGCTCCGAGCTGCTACGTGCCGTCTGAACCGCTACAAGGTTTCCTTCTGATTGCCTTTATTTCCACTTAATGTCTTGGTAACGTTTCCTTGAGGTTTTATTAGAAAGCGTTTCAGGTACAGGATGCATGAACTATATGGTTAGTTTTGCAACAGTGTTGtatatgtaacacacacacacacacaaaactcagCTATAGTGCCTCGCAGAAGAGAGACGATGTTTGCTGTGGAtcttttgtctgtttctttttcaatatAAACGTCTGCATTGATCACTCAAGTCTCATTTGCTTTAACTGATATTATAACACGCTGGTTttgaacagaaagagaaaaacactatCACCAGAGCACCGTATACTACACAAAAATAGCTAATATAAATCCTCAcgatattaataaaacattcttacctcgaatttgatttttaatgtaCGAGAGcagtttaaaaaattacatttttaggttGAATCGAAAAGACTTGTCGAGTAcaatttgtgaaaaatgtatcttaaacTGTTGATGATGGCTTACACGTTTTATTATGGAGTCAAGTGTATGAATGACGctgtgaaaactgaaaaataaacatttgacttTTTCATATTATGGAAATCGCATATGGATTTGGGATTCGCGTGATTTTGCTTTTCGGAAACGAAACCAGTTTTGATTCATAACTAGTACGGTCTGtgttcataatatatttgtaatccGTTAGGCCGTAACTCGAAAGCAGAAGTATTTTTATCTATGACACAGTTACGACATAGttaaccaacaacaacaaaaagaagtTCACACCATACAGTGCAAACAAGGAATATGAAGATGATTGTGGGAAGGCAAATCGTTTTGTtagttaaaattacatttagcaTTCAGCAAACATCAAGAAATGTTaactttttactgtttaatacGTCACTGACTGAACTACATTTGTCCAGCTTGCCAGATTGATGTTGTTtcaactgttgtttttttaacttaatcAAAAAAGGGACATACTATAACGTAACTAAATGAAatcaatatttataaaagttaatACGGTACGTTTTTTACTGTAACAGATGCATTTTACTCACAATCAGTCTACCTAAAATAGTCCCTTGGAAGAAAAAATATGCATCTCTAATTTGTACATTGTCAAAATCCATTATTTAAATCCGTTATGTATTGCGTTGACCTTCATTGAGTTCATCTTTATTggtttattgaatatttattaccGGTTTATCTATAATTAGATGAAGCGAGATTAAAGAATAAATCGTTTGAAGTGTCTCGATGGATGGCGTAGaagtaattcaattcaatttgttcagcactatttatatttatatacactattACATTTTCGAACTGAAGATAAAACCAACGTGAACATATGACGATGACTTTTAACGTACCGCTTAAGAAAAGTTCCAAATCTGCGCCATGAAAGTTTTCGTGGCAGTCAGTCTTTTTCTTCAAAAGACTAAACCTTCTAGAacttataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229897 lncRNA downstream 13221 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 78171 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 396731 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 412565 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 420598 5087348 ~ 5089097 (-) True G155153
TU229905 lncRNA upstream 11653 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 140630 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 301923 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 677709 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 835619 6349007 ~ 6351825 (-) True G155388
XM_043225520.1 mRNA downstream 135 5505406 ~ 5509560 (-) True LOC122329290
XM_043225385.1 mRNA downstream 16762 5484212 ~ 5492933 (-) False LOC122329188
XM_043225511.1 mRNA downstream 29873 5477841 ~ 5479822 (-) True LOC122329286
XM_043225512.1 mRNA downstream 49571 5456665 ~ 5460124 (-) True LOC122329287
XM_043225526.1 mRNA downstream 60099 5444999 ~ 5449596 (-) False LOC122329294
XM_043225521.1 mRNA upstream 209100 5722488 ~ 5726263 (-) True LOC122329292
XM_043225508.1 mRNA upstream 304253 5817641 ~ 5824247 (-) True LOC122329283
XM_043225413.1 mRNA upstream 339721 5853109 ~ 5858747 (-) True LOC122329222
XM_043223967.1 mRNA upstream 346523 5859911 ~ 5865217 (-) True LOC122328332
XM_043225202.1 mRNA upstream 355738 5869126 ~ 5872179 (-) True sac3d1
TU229892 other downstream 29876 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 54648 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 675175 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1314697 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 1217463 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1253220 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1260190 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 1260190 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 1260190 6773578 ~ 6822978 (-) False rps21

Expression Profile