RNA id: XR_006247897.1


Basic Information

Item Value
RNA id XR_006247897.1
length 1981
RNA type transcript
GC content 0.51
exon number 15
gene id lad1
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3894966 ~ 3905892 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCGCGAAGGTGCGGGGTAAAGGTGGCACGCAGACACGGGGAAGCGCGAGACACGTTACACACCTCCACAGACCTCTCTCCAACAGACTTCACCACAGCTACACCAAAACCATGTCTATTAGCCGGAAAAACTGGTCGGCTTTGTCAACGCTGACTCGGCAGTGGACTgtggaggatgaggaagaggtggagagagagaagaggaggaagaccAGGGAGTCTACAGCAGACACGGATGAAAGTCCCTCTCAAGAGGCCGAACTACAAACCAGTAGCGGGTCAGCCGATGCTGGAGACTCCGGTGGCGGTGCGGAGCAGCTGCAGATGGACTTTGTGGAGATGCTGCGAGTCCGTGATGAACGGAGGAGGATGAGGCACGTTGAAACCCTGAGGAAGAATAAGGAGGAAGACGACGGAGGTAAAGAGGCCGGTCCGGATGCGGAGCCCCACGTGGAGCTGCTGGGAGAACAGCAGGACGGGGAACGCTTCAAGAACATCCAGAGCTGCGTGGAGAGCTTCCTGTCAGCAGAGCCTCCCGCCAGCTCCAGAGACTCGGAGACACGCCAGAAGCATGAAAATGGAGGCACGAACCAAGATTCAACATCAACAAACTCTCAACCCCCCTCGAAAGCATCCAGAAAGTTTGTGAGctctctctccatctccttTGATAAGAGTCCCACATCACCCTCAACAACCAGCAGACTGGTTTCTCCTCTGAGCCCCAGGTCTCCGCCCCCTCACGCCCCGGGGGCGGGGTCACCAGTCAGCCCCGCCCACTCCGTCTCTATGAGCCCCACACCGAACGGAGACGCAGCGAGGCATGAAAACGGGTCACCGAGCAATTTCGGAGCAGCCGAGAAACCTGCGTTCACGCGGCAGAGCTCCAGAACGGTGTCCTTCAGGATGATGAAGAGGAAGGAGGAAGAAAACATGCCGCTGCAGAGAAGTGCAAGTGTGCGGATTGCAGCCAAGACTTTTGAATCTAATAAGGAGGAGCAGCAGAGCCCGTTTCAGAGAAACTCCCGCCAGAGGTTATCATCTCGCTCCATTCAGGAGAAAATGGAGCGACTGGCTCAAGCCTCACAGAAATGGGAGATATCCAAATCGGCCGTGGTGCACCAGAGCGTGTGTTTAGCGGACGAGGTGTCCAGGAAGAGGGAGCTGTTTGAGAAAGAGCAGGAGGGATCCGACCGCAGCCATGTCTTCTCCAAACAGGAATTTCGCAGCTTTTCTGCGGGAATCTCTGATCGAATTAATCGCTGGGTTcagaagaaaacattaaacGTGTCGTCGTCATCATCCTCGTCAGCATCTTCGTCCTCTCATAGTCCTTTGGATCTGAGACTTGTGAACATCTCCAGTAAGAAAAGTGTGTTTGAAAGAGGACAAGACCAGGACCACAAGTGACACTCCAAGACAAACACAAAgtttaatgAGATTGATTTGATCACGCTTCAGCTCGATCGACTCTTTCAGACAGTCAGGGCCAAGGATTGTCTCTAAACTCTTCTTCCTTCTGCTTCCTTCCGACGGCTAATTCCTCAGCACTTTTAAGGCGTAGTACTTTATTTGGGTAAATCGAAGGCTTCTGTTATTGGTTGTGGATGCGTATACTAATGGACTGCGGGTCTTCACACACTAACTGAACATCACGGGGTTTATCTGACAGCAGGAacacctcctcttcctcacagCTTGACGTTTGTGCCGTTGATAAGAAATAAAGCTCAGTGACTGATTTGTACTGAAGCTGGAACGGACCTGTGCTCTTGCTGCTGTTGTCTCAACTTGTCATAATGAGGAAACCTAATCTATGGAGAAATGTGTCCCATCAAGCCCTTTGAAAACTGACTTCAATCCATTCCAGTTCAACCAAGCTTgtgcttccttttttttttttgctaaccGACCTGTCATGTAATTATCTTTTCTGCCCAGAAGGGTTATGCtgtagattaataaaaaaaaattattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229116 lncRNA downstream 27125 3867282 ~ 3867841 (-) True G154724
TU229114 lncRNA downstream 36296 3855066 ~ 3858670 (-) True G154723
TU229108 lncRNA downstream 56833 3837662 ~ 3838133 (-) True G154720
TU229092 lncRNA downstream 67776 3826827 ~ 3827190 (-) True G154708
TU229083 lncRNA downstream 88065 3806543 ~ 3806901 (-) True G154703
TU229192 lncRNA upstream 31459 3937351 ~ 3937638 (-) True G154763
TU229193 lncRNA upstream 32681 3938573 ~ 3939050 (-) True G154764
TU229216 lncRNA upstream 144398 4050290 ~ 4050580 (-) True G154783
TU229223 lncRNA upstream 157631 4063523 ~ 4064880 (-) True G154789
TU229221 lncRNA upstream 158073 4063965 ~ 4065529 (-) True G154787
XM_043224947.1 mRNA downstream 1290 3882020 ~ 3893676 (-) False tnnt2a
XM_043224946.1 mRNA downstream 1290 3882020 ~ 3893676 (-) True tnnt2a
XM_043225547.1 mRNA downstream 124103 3701606 ~ 3770863 (-) True LOC122329314
XM_043224432.1 mRNA downstream 206768 3682092 ~ 3688198 (-) True etv7
XM_043224437.1 mRNA downstream 213007 3674465 ~ 3681959 (-) True pnpla1
XM_043225417.1 mRNA upstream 1370 3907262 ~ 3913491 (-) True tnni1a
XM_043225419.1 mRNA upstream 11886 3917778 ~ 3919822 (-) True phlda3
XM_043225418.1 mRNA upstream 11886 3917778 ~ 3919817 (-) False phlda3
XM_043225391.1 mRNA upstream 16592 3922484 ~ 3927906 (-) True csrp1a
XM_043225478.1 mRNA upstream 268022 4173914 ~ 4194996 (-) False LOC122329268
XR_006247838.1 other downstream 449002 3436779 ~ 3445964 (-) False LOC122328836
TU228731 other downstream 937694 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 943338 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 943338 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 952397 2925529 ~ 2942569 (-) False G154445
XR_006247892.1 other upstream 268022 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 268022 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 925926 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 1548525 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 1572022 5477914 ~ 5479819 (-) False LOC122329286

Expression Profile