RNA id: XM_043225542.1


Basic Information

Item Value
RNA id XM_043225542.1
length 4151
RNA type mRNA
GC content 0.43
exon number 14
gene id cacnb3b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15673052 ~ 15685048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTCAAAGCACCTGTTTTCCCCGCTGCAGGGGAAGGAGATGTGAGAGTGTGTCAGTGTCTCGTGTGAGATGTAAACATCTCCTCCCCCGCTGCAAGGGCTGCAGAAGCGCATCTCTAGCGTCGTGTGGAGCGGGACAAAATGGAGCCTGATTGAACGTGAGAGCAGGCGGAAGAAAGGCAGCAGCGGCAGAGGGAGGGCGTTTGCTCTCAGCGAACAGCACAACTCAGCTGCTGCAGTCAAGGCATCAATTTTGTATAGGCGGTGAGTGCGGTGCCAGAGCGTTCCCCTCCGTTTACCGCTGACCATGGAGAGCCGCTCGCGCCTCGCTCGAGCGCGGAGAGAGTGATGGGGGGCGATACGAGCCGTCTCTATAGGCATGTCCGCGTCCGATTCTAGTGCAGCGCTGCTCAGCTGCAAGAGTTCTGCTGATTCCTACACGAGTAGACCATCGGATTCCGACCTGTCCCTGGAGGAGGACAAGGAGGCGTCTCGGCGTGAGGCCGAGCGCCAGGCCCTGCTCCAGCTCGAGAGAGCCAAGACCAAACCTGTGGCGTTTGCAGTGAGAACCAATGTCAGCTACTGCGGGGCTCTCGATGAAGACTGTCCGGTTCAGGGTGCTGCCATCAACTTTGAAACCAAAGATTTTCTACACATAAAAGAGAAGTATAATAATGACTGGTGGATCGGGAGGCTGGTGAAGGAGGGGGCAGATATTGCCTTCATCCCCAGCCCTGTTAAACTGGAGGCCATGCGGATCAAGCAGGAACAGAAAGCAGCCCAGAGGAAAATGGGTGGAAATGCTTCATCTGGCGGCTGGAGGTCTACTCCTCCTTCTGCAGCCAAACAGAAGCAGAAGCAGacGGAGCATGTTCCACCCTATGATGTAGTTCCATCCATGAGGCCTGTTGTTTTGGTCGGCCCCTCGCTGAAAGGCTATGagGTGACCGATATGATGCAGAAAGCCTTGTTTGACTTCCTGAAACACAGGTTTGATGGGAGGATTTCTATCACACGGGTGACTGCAGATCTGTCTCTGGCCAAGAGGTCTGTACTGAACAAGAAAGCTATCATGGAGAGGTCAAACACACGCTCCAGTCTAGCCGAGGTGCAGAGTGAGATTGAGAGAATATTTGAACTGGCTAAAAGCCTGCAGTTGGTGGTCTTGGATGCAGATACTATCAACCACCCTGCACAGCTTCTCAAGACCTCCCTCGCCCCCATCATTGTCTACGTCAAAGTGTCCTCTCCAAAGGTTCTTCAAAGACTCGTTAAATCCAGAGGGAAATCTCAAAGCAAACATCTCAACGTGCAAATGATGGCTGGAGATAAACTAGCTCAGTGCCCACCAGAAATGTTTGATGTTATACTGGATGAGAATCAGTTAGAGGATGCCTGCGAACACCTGGCCgaatatttagatatatacTGGCGTGCCACCCACCTGCCAGGCTCCGCCCCCCTGAACCCTCTAGTGGAGCAAAATGTAGTTACACCACCCTCCGCCAACTCCAGCCAACAGTTCTCAGAGACACAGGAGCTAATTGAATGAGCACTACCACGAATTAGGAGTGATAAAGAACATTCCAGAAAGACCCCCAGAATATTCCTCAAAGGCCAGCCACTCACTGCCCCAGAATGAGATGGGGCTCGGAGCAGCTGCCCCCGATGAGAAAGAGGAGGAACGGAGGGATGGAGAAAGAGATGAGGGCCAGCGGAGAAGTGGACCAATCCCAGCCTCACTGACAGTGACAACACACTCTCCTGCACTAACACATGTGTCGTCCTTTACATCTCAGGACCACTCTGCTGCAGGCCTtaagccaacacacacacatacacaggtaTACACACATTCAACTGGTCTGAATGTTCCTGCATAGCCCCACGCTGAGATCAACAGGGGTTTCCCAGCCCCTTGGTGATGCCGTCTGTCTGCCAGGTTCTGCCAGCCTGACTCTGGCACCGGCATCAGAGCATCCATACCATGCCTCACAAAGAAGGGCACCACATGCCACTAACATCTCTCTCCCTCAATCTCCACCTCCTGCATCGCTTTTGGTTAGTTTTCAAGGCCTTTTGCACAATacacttcattttaatcattcGTCAAATACAGTTCACTCATAATTAATAACCCAAATGGCTTTATGTAGCACAACCCTCGAATAACTAATCTATATACTGAAAccacacatttttgttttctgttatatCCTGTTCCATTTTTCTTGTGTATTTTCGTCCACCGGAAATCTTGTCCAATCAACAAGTAACTCATCAGTATTTACAACCACACTGCACTAATATCACCCTTTCAGATCAATGAAAAGCAGACCACATGAATGTTTGTACATCTTTTGCCTAGATCTCAGTATTGCACTAAACAGCATATTATacaacatattatttattttgtccaacagtggttctcaactgaGACCTCACAGGCCTGTTCTGATTGAACACGTGATAAAACTATGCTAAATGCACAGAGTATATTGCAACTAATGTTATAACAACGCAAAGTCAGGGTGATAATACTCGTTCAGTTTTAAAAGGAGAATGCTGATTCACCTTTAACCAGGTAAATTAGGTGGATGCCAACATAGATGACAAACTGAAAGAATATCACCCCAAATATATTAAACTTAATTTGTATTGAAACAAAACATGGTTTGTGTCCCCGTGTTTTATGAGctattcattttgtttattatttgtaactacagttgaattcatattttttttatataaatacattttaatatttgaatttaagAGTTTCTTTTGTGCAATAAACTATTTTGGTGCTGTGTTAGGTCAAATAAAACCAGTTGAGAACCTCTGCTCTATACTAATGTTGGAACTACAGCGACATCTAGTGGTTTTGTTTGAAACCATAAAAGTTACACCCTTGCAAACATCTGTCTTCACACAATTATAACTACATAACCATACCATTAATTAAATGACAACGGTGAGATGTGTAACGGTATAAAGACGCATTGCTTCAGAATCACTAAATATCCTTTTCTGCATTTTGAGAATCACAAAACGCTGATACAAATTcctaatatttagtttttatcttAACAATCAGCACTTATTTGCATGATAAGTGACGGTCTTGCTGACATATCTGCTGCTGTAATTGTTGAGTTTTGCTTGCTGCTGTTCTTCCGTGCAATAACGAAATCATTTACAAAGATTATCACACTTAATGAATGACTCATGTCTTATTTGCAAGACAATCTCTTAACTAAATGATCACTAATTTACTCtttgcatacatacacatgcagtCTCATTGTACATTCAAGCTAATCATGACTATGCATGACACAATCAGGCATTTGTAGAAATAAACAGCACTGTAAACTGAATAGGGAGATGCAATTGAcataaaatcatataaacaaTCACAAACATCTGCTTGAGTATATACAGTTTCcacattaaaattcatttccctcatctatctatatatatataaatgcacaaacaaatgGCTTTCTATTTGTTTAAggtgtacatatatattattatttacatatattgaacaaaaatgttatttgggACCATGTTGAATCTTCTGTCGATTTTTAAATCACTGCATATGAAAAGCAACAAACAAGAGACGCAAAGTTTCAAGAGGCTTCAAAGCACAATGAGCTCTTCCCAACTGAAAATATGCTTGATATCTTTCGAGGTGATTTGTACATAGTCAAGAACTATGTCTTTGGGTCTCCAAAGTATATTTTCAAGGCTAGTTGCGtattttattagatatttatgTTGTCTCTATCAcaatatactgtactgtatgcAACACTGGAGGAAGTAGGCAGACAATGGCTTGGACTGAAAAAGGTCTATCACCGAATAAAGGGAAATCAATACGATTGCActattttggttttgtgtttgAGGTTTTCTTTTGGTTTACAATGCAATAAATGCACTAAGTGTGTAAACCCTCTTCCAGTAGTTCATTTATCATATTGTACTAATGTGACAACACTGACCCAGCACTAagtctaaaaaataaatttaaaaaaaagtgtacatcTGATGCTGAGCAGAACTATTGTGTGCTCTGgggaagaaataaataatgtaaaagaaaataaaaaagaaaaagaatggtC

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234068 lncRNA upstream 57254 15611607 ~ 15615798 (+) True G158030
TU234069 lncRNA upstream 59202 15613235 ~ 15613850 (+) False G158030
TU233565 lncRNA upstream 129124 15540793 ~ 15543928 (+) True G157728
TU233538 lncRNA upstream 186072 15482672 ~ 15486980 (+) True G157705
TU233537 lncRNA upstream 190590 15479043 ~ 15482462 (+) True G157704
TU234108 lncRNA downstream 32742 15717790 ~ 15720006 (+) True G158061
TU234103 lncRNA downstream 55588 15740636 ~ 15741661 (+) True G158056
TU234115 lncRNA downstream 60069 15745117 ~ 15746289 (+) True G158068
TU234123 lncRNA downstream 133413 15818461 ~ 15819265 (+) False G158074
TU234124 lncRNA downstream 133413 15818461 ~ 15827933 (+) True G158074
XM_043225537.1 mRNA upstream 64599 15600652 ~ 15608453 (+) True zgc:158263
XM_043224113.1 mRNA upstream 194441 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043224965.1 mRNA upstream 334785 15324344 ~ 15338267 (+) True ptpn22
XM_043224984.1 mRNA upstream 507514 15159750 ~ 15165538 (+) True LOC122328905
XM_043224992.1 mRNA upstream 595542 15074016 ~ 15077510 (+) True LOC122328910
XM_043225416.1 mRNA downstream 6462 15691510 ~ 15702243 (+) True rnd1b
XM_043225319.1 mRNA downstream 39735 15724783 ~ 15729206 (+) True ptges3a
XM_043225227.1 mRNA downstream 48638 15733686 ~ 15736220 (+) True mipa
XM_043225018.1 mRNA downstream 176991 15862039 ~ 15863648 (+) False LOC122328928
XM_043225017.1 mRNA downstream 180307 15865355 ~ 15868101 (+) True LOC122328928
TU233395 other upstream 368502 15300704 ~ 15304550 (+) True G157620
TU233466 other upstream 676907 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 923650 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 958519 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 987736 14683990 ~ 14685316 (+) False LOC122328906
TU234237 other downstream 298622 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 322596 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 337151 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 936150 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 1046298 16731346 ~ 16731899 (+) True G158486

Expression Profile