RNA id: XM_043225559.1


Basic Information

Item Value
RNA id XM_043225559.1
length 1950
RNA type mRNA
GC content 0.53
exon number 3
gene id sox18
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7088177 ~ 7091244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACTCACTACAACTTTCAAACTCAGCACAAGAACTATATACCGTCTGGAGGGCAGGAGTTACAAAACACTAACATCTGTGGGATTTTATACTTTGTACTCCGAAACATCCGAAAAGAAAGGGTgcagctctttttctttcttttttacgaTTTGTTTCATTTGGGTTACTGGTCAGTCTGTATTTAAAGTAGCTTAAAGTAGCTCGGTGTTGCTTCTATCCAAAGACAACAGCGTGCTTTAACCGTGGTGGTCTTGCTGGAATGAATATATCTGAGTCTAGTTGCTGTCAAGAGGCCAGTTCTCAGCCCAGCCAGGTTGCGGAGCGTGGGACATGGGGTGCCTCTTCCAGCACTCCGGGCCTGACGGGACATGGTTTTGACCACAGCCGGACCACAGAGCTGGCGCCGGTGCCCGGCTCTGGAACGCGGACAGGGTCCCGAAGCGGAGCGGAGGCCAGGACGGGGAGCCCGGACTCAACCCGCACTGGAGCTCTGACCCTAGGCTCCGGAGAGGGGAAATCAGGGGGAGAGTCCAGGATCAGGAGGCCCATGAATGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAACGTCTGGCACTCCAGAACCCAGACCTGCATAACGCCGTGCTCAGTAAGATGCTGGGTCAATCCTGGAAGGCTCTAAGCACCCTAGACAAGCGTCCGTTTGTGGAGGAAGCCGAACGACTGCGTTTGCAGCACCTCCAGGATCACCCAAACTACAAATACCGTCCTCGCCGCAAGAAACAACCCAAGAAGATGAAACGAGTGGAACCGGGTTTGCTCCTCCAAGGCCTAGCTGGCGGCCCTGGACCAGGAGATGCCTATTCGCCGCATCGCCATGGCCATCATCTGCTGCCTCCTCTGGGACACTTCCGAGACCTCCACCCCTCTGGAGCCTCGGAGCTGGAGAGTTACGGCCTGCCGACGCCAGAGATGTCACCGCTTGACGTGCTGGAAGAGGGAGGCGGAGattctgtgttttttccccctcacatGCAGGAAGATGTGGGTCTGGGTTCGTGGATAAACTACCACCAGCATCCAAACCATCAGACTGGCCACCACCCTCACCACAACTCCCATAACCTCCAGCATTCCCACCCACACCTCAACCAGAAGTCTCCGCTGGCCTGCCTCCCGCTACAGGAGAAATGCCTGCTCGTGGAGTCCACGAACCCTAACAGTCTCTACCCCAACATGAGCCTCCCAGAATCCTCCAAGGCTCCTCACACCCCCACACCTGCAGGCTATTACGGTCAGATATACGGGAGCAGTCAGCCCCAGCCTGCCTTCACCTCTCATCTGGGCCAGCTGTCTCCTCCGCCCGAGACCTCGGCGGTTGCTCAGGTCGCTCCGCCCTCTCTGGACTCTGTGGACCAGCTGGGACCCTCGGCCGAGTTCTGGGGCGAAGTGGACAGGATTGAGTTCGACCAATACCTGAGCGCGAGCAGGACTCGATTGAGCAGGAACACCCCTTGCGAGGAGAGCAGCGCTTTGATATCAGCCCTGTCCGACGCCAGCAGCGCCGTTTACTACAGCGCATGCATTACGGGATAAAACTGCTTCTCCGCGCAGTCCTGAAGTCTGGTGCACATATGGCTTTTTTTTGAGGCTCAGAACTTTTTGATTTATTCGAGTTACCTTCTTCAGGGAATCATCTTGCCCGGTTTCACGAATCACTGGAGGTTACTGAACTCTATACAGGATGGTTCTCACCGTATAGACTTCACTAAATTGCATTTCACAGTATGACTAGTCATTTCTGGTCTTGATAACCTGTACTTTCTGAGACTGTGGCCGATTTAACCAATAATTTTGCTGACTCCATCCAGCTACTGTATGCTTACGGTCTCAAATGAGGGTACTGGGGCGTGGAAGTCAagaatgtgaatatttttgcaatacatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230388 lncRNA downstream 20353 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA downstream 20353 7063578 ~ 7067824 (-) False G155586
TU230378 lncRNA downstream 249611 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 252588 6835375 ~ 6835589 (-) True G155508
XR_006247875.1 lncRNA downstream 283258 6794103 ~ 6804919 (-) True LOC122328996
TU230405 lncRNA upstream 9064 7100308 ~ 7106154 (-) True G155597
TU230413 lncRNA upstream 29159 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA upstream 31685 7122929 ~ 7124586 (-) True G155606
TU230416 lncRNA upstream 33584 7124828 ~ 7305564 (-) True G155607
TU230442 lncRNA upstream 309737 7400981 ~ 7401192 (-) True G155620
XM_043224180.1 mRNA downstream 27926 7008897 ~ 7060251 (-) True LOC122328474
XM_043225536.1 mRNA downstream 84654 6994167 ~ 7003523 (-) True LOC122329304
XM_043224124.1 mRNA downstream 106216 6964742 ~ 6981961 (-) True LOC122328436
XM_043224119.1 mRNA downstream 161761 6871977 ~ 6926416 (-) True LOC122328429
XM_043225551.1 mRNA downstream 220877 6858007 ~ 6867300 (-) True ccm2l
XM_043225082.1 mRNA upstream 219326 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA upstream 219326 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA upstream 219326 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA upstream 219326 7310570 ~ 7342531 (-) True rgs19
XM_043225086.1 mRNA upstream 219326 7310570 ~ 7341537 (-) False rgs19
TU230379 other downstream 84690 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 91368 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 106388 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 220896 6864425 ~ 6867281 (-) False ccm2l
TU230387 other downstream 227529 6858015 ~ 6860648 (-) False ccm2l
TU230401 other upstream 185204 7276448 ~ 7278323 (-) True G155596
unassigned_transcript_2580 other upstream 1094653 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 1094951 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 1095573 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 1095873 8187117 ~ 8187210 (-) True trnai-uau_8

Expression Profile