RNA id: XM_043225560.1


Basic Information

Item Value
RNA id XM_043225560.1
length 2245
RNA type mRNA
GC content 0.52
exon number 7
gene id gata5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7978891 ~ 7985474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGTAGAGAGCAAATCAGAGGACAGTTATATTGGGCATTATCTGCAGCAGCGGCTATCTCCAGATACAGGCAAGGCACGGGGACGCGTCCGAACGCGGAGAGGACGGTTGCggggtttttttccccacattgtCGCAGACGCGTTCAAAGTTTGAATTGTGGGCTGAAATCGAGAAGAAAGAAGAGGCTGGAGCTTCCACGGCGATATTCGCTCAGGTCACTTGGAAAAGAGGGTTCCTGACTTTATCGCTGCCCGTCCTTATCTGgagaaattgcttttttttgagGCCACTGCTCACCGGACCGTCGCATTTGGAGATTTTGGACTTCACTTTTAAGATTTCAGAACTTGAACGGATAGCTTAGTCGTCGGATACACCATGTATTCGAGCCTGGCTCTATCTTCCAACCCGTCCCCCTACGCGCACGATTCCGGGAACTACATCCACCCGTCCGCCAGCTCACCTGTGTACGTCCCCACCACCCGCGTCCCCGCCATGCTCCAGACCCTGCCCTACCTCCAGACGTGCGAGTCCTCGCATCAAGCCCACGGGCTCGGCAGCCACCACGCCTGGCCGCAGACCGGCGCGGAGAATTCCTCCTTCAACCCGGGCAGCCCTCACCCTCCTCCCGGTTTCTCTTATTCGCACAGCCCGCCGGTGAGCAGCAGCACCGGCAGGGACGCCGCGTACCAGAACCCGCTGGTGTTGGGTAACGGCGGCCGGGCGGATCAGTACGGAAGCGCCCTGGTGCGCTCCGTCGGCGGCTCATACTCCAGTCCGTACGCGGCCTACATGAGCCCGGAGATGGCCACCTCATGGACGCCAGGGCCCTTCGACGGCGGCATGATCGGTCTCCAGGGCCGCCAGGGAACTCTGCCGGGGAGGAGGTCCAGTTTAGACATGCTGGAAGAGCTGCCGGGTGAAGGGCGGGAGTGTGTGAACTGCGGCTCCATCTCGACGCCGCTGTGGAGGAGAGACGGTACCGGACACTACCTGTGCAACGCCTGCGGCCTCTATCACAAGATGAACGGCATCAATCGACCCCTCATCAAACCACAGAAACGCCTGCAAAGCACATCGCGACGAGCAGGCCTGTGCTGCACGAACTGTCACACCAGTACGACCACGCTGTGGAGGAGAAACGCGGAGGGAGAGCCCGTCTGCAACGCCTGCGGTCTCTACATGAAGCTCCACGGGgTACCGAGGCCGTTGGCgatgaagaaagaaagcatCCAGACGAGAAAACGCAAACCAAAGATGCCCAAAACCAAAGCATCCTCAGGGTCAACAGTGTCTGGCGCTACGTCTCCCACTTCATTACCTGCTTCAGAGAACGCCTCTACAATAAAGAGCGAACCCAATATCGCAGCTTCGCCATACGCAGGCCAAACCGTTGTCTCGGTCACGCAAGGATCCACGCAGTTGGACAGTACCAGTTCGGGACACGTGGACATCAAATACGAAGACTACACATACACCCCGACGTCGATCGCCCCGCAGAATTCCTGGTGTGCGCTGTCCCAAGCGTGATGTGAGACCTACTACCTTTTCTAAACCCTCTccagtgcattctgggagaaAAGACTTTTAACGAGATCTACCTAATAGAACCTTTACACAAATGTAGAGAGACGGAGCTTAGGAAGGCAAGAGACTGACTGTAATTTGTGCTGCTTTGCCTCGTTGATTTATCGTGGCATATCCGTCACGGGCCAATTGTGCCAAAATACGGAGGGCCACAAGCAGCGACTCGGCAACAGTTCTCAAGTTCCTTAAGCAATGATCGGGaggacaaaaaaacatgctttttatggCTTCTGAACATGTTTCACGGCTTAGATGTTAATGATTTACTTTTAAGATACATTATTTATGTTGAGATAAGAATGGTGGAGGCACACAAGTCTCTCCCATAATTTTCCTTATCCTTCAGGGAATGCGTCTTTACGGTCGTTATGACTTTAGATCGCATACTTTCCCTGAATGAGGCTTTTAAAAGTTTCATTGTTGTCTTTGCTGATTCCAGACACTTTTAATGCTGTATTGTATTCCTCTGATGATCCAAAGTGCAATGATCCTCGCTTTTCAGCTAATTTTGAAAAGGggcacatttatattaattgttcAAAATTATGTGTTGCGTTTTGTCTGAATATGTTAACCtaattttatttgctgtattttgttgATATATATTGGAATTAtatcattgttttattgcatataaaattGCCAAACGTC

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0001706 endoderm formation biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0060972 left/right pattern formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17896 GATA5; GATA-binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230585 lncRNA downstream 5566 7973103 ~ 7973325 (-) True G155698
TU230540 lncRNA downstream 126640 7819746 ~ 7852251 (-) True G155669
TU230569 lncRNA downstream 142353 7834562 ~ 7836538 (-) True G155684
TU230570 lncRNA downstream 142353 7834562 ~ 7836538 (-) False G155684
TU230571 lncRNA downstream 142353 7834562 ~ 7836538 (-) False G155684
TU230649 lncRNA upstream 191225 8176699 ~ 8177518 (-) True G155737
TU230697 lncRNA upstream 321805 8307279 ~ 8382607 (-) True G155759
TU230759 lncRNA upstream 540928 8526402 ~ 8532927 (-) True G155803
TU230786 lncRNA upstream 639452 8624926 ~ 8625642 (-) True G155825
TU230942 lncRNA upstream 643225 8628699 ~ 8629103 (-) True G155933
XM_043225407.1 mRNA downstream 23896 7932443 ~ 7954995 (-) True LOC122329207
XM_043224019.1 mRNA downstream 46787 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA downstream 46787 7922253 ~ 7932104 (-) True tm9sf4
XM_043225052.1 mRNA downstream 112504 7862203 ~ 7866387 (-) True LOC122328942
XM_043225053.1 mRNA downstream 117537 7854304 ~ 7861354 (-) True LOC122328943
XM_043225269.1 mRNA upstream 569033 8554507 ~ 8557031 (-) True LOC122329065
XM_043224373.1 mRNA upstream 714351 8699825 ~ 8777258 (-) False casz1
XM_043224374.1 mRNA upstream 714351 8699825 ~ 8777258 (-) True casz1
XM_043224375.1 mRNA upstream 714351 8699825 ~ 8748315 (-) False casz1
XM_043224372.1 mRNA upstream 714351 8699825 ~ 8748315 (-) False casz1
TU230401 other downstream 700568 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 975404 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 982082 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 997102 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 1111610 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 200423 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 200721 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 201343 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 201643 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 203339 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile