RNA id: XM_043225565.1


Basic Information

Item Value
RNA id XM_043225565.1
length 2368
RNA type mRNA
GC content 0.49
exon number 20
gene id clcnk
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13905088 ~ 13911750 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCAGTGGCTGCCCAGAGGCAAGCTGGAGAGGACGTGCACCATAAATAAGTTAAAGCTTAATTTTCCTTTCAAGCTACATCTGGTAATGCCAGAGTTGATTCTGACCTCAACAGTCTTTCATGTGGAATGAGTCAACTGACTAAAAGAAAATGGATGAAACCTGTGTAAACGTAAAATGtcctgaagaaaatgaagaACAGTGCGCAGATGAAGATAAGATAGACCAAGATAAGGTGGAGGAAAAGCTAATCGGCTCTAATGTGCGTTCATGCAAACCATGGCAAGAGTCCCGCTCACGAATCAGAGAGTGTGCGCTGTATGTGAAGAAGGTCCTGGTGTCTTTTGCTAGCATGGAGTGGTACTGTTATGCCCTGTTAGGGATCATCACCGCTCTAATGAGCTTCTTCATGGATATGACAGTAGCCAAGCTGTTGAATGCTCACCAATGGCTATACGGCTGTCTGAAGGGTCACCACCTGCTGCAGTTCCTCTGCTGGACGCTTTACCCAGCTTGTCTTTGTGCTCTGTCCACCAGCTTTGCCCACAGCATCTGCCCATTCTCCGCAGGCTCTGGTGTTCCTGAGGCGAGGGCTATTCTCTTAGGCATGGACATGCCAGATTACCTGTCCCTCTCCAATCTCTTCGCTAAACAGTTTGGCCTGATATGCACACTAGCTTCGGGCAGCACAGTGTTTCTCGGCAAAGTGGGTCCATTTGTCCATTTATCTGTCATGGTGGGTGCGTTCATGAGTCGCCTGCATGTTTCCTGCCGTGGTGGAAAACAGAGAGCGGCTAAAGGGGAAATGTTGGTTGTGGCGTCAGCGGTGGGCGTCGCGAGCTGTTTTGGAGCTCCGGTCAGCGGTGTTCTGTTCAGTATAGAAGTGATGGGGACTCATTATTCAGTCAGAGATTATTGTCCCTGCTTCTTTGCAGCGGCCTGCGGCGCAGTCACCTTCAGACTGCTTTCTGTCTGCAACAGAGATCAAGAAACCATCCAGGCCCTGTTTAAAACCAGCTTTTCTTCTGATCTTCCCTACCAGccctttgaaatatttattttcgcTCTTCTTGGGCTGTTCTGCAGTATGctcagctgcatttatttattctgtcatCGCTGGGCTCTGCGTtttgtcaaaacaaacaaacccatcAGCAGACTTCTGGCAACAGAAAAGTCTCTTTACTCAGCCATAGTGGCATTTCTCCTCGCCTGCTTTACGTTTTATCACTCGGCGGGACATTTCATAGCTGCTGAGCTCACAATGAAGCAGCTGCTTACTTCACTGTTAGACGGCACTTCCTGGTACActgtttcccagaatgcatctgCCCTGCCTGAACCTCAGAAAACATTCTGGCAGGCTTGGAACCCACCTGGCAAGAGCTACTTCCAAACACTAGGATTTTTCATTACTGCAAAGGTTGGGCTGTTGGTTGTGGCTTGTACCTTGCCTTTACCTGCGGGCTATTTCATGCCAGTATTTGTTTACGGTGCTGCAGTGGGCCGTTTGGTAGGCGAGGCCTCAGCCTATTTGCTCTCAGATGGAATCTCATCAACAAAGAGTTTGATAAACCCGGGCGGCTATGCGCTAGCAGGAGCAGCTGCGTTCTCTGGGGCTGtgacacacacgctctctcctGCTCTGCTGGCTCTGGAAATGACCGGTCAGTGCTCTCACGCCGTCCCCGCTCTGGTTGCCACGCTGGTATCCAACGCGGTGGCTCGTGCGAAGCACCGTCCATCTTTCTACGACGGCATATCCCTTATTAAACAGCTCCCGCACTTGCCATCTCTCATCCGGGCTTGTCCAAAGTTGGCCAGTGTTCAGATCAAGCAGTTTGTGATCCAAGCAGGAGTTGTTCTGGAGAGGACAGAGACACTGGCGAGTCTGAAGCACATGCTAAACGACAGCGCAGACAATGTATTTCCTGTGGTGGATTCTCATGACTCCTCTATTTTCCTGGGTACAATCAACAAATCACAGCTGCAGGAGTGTCTGCGTCAGCATAGAAATGAGGGTTTATGTAAACAGTTAGAGGAAGTATGCGCTATTCAACCTGTTCGGCTACATCTGACTCCTGAAAGCACTGTAAAGCAGGCTCATTGCATCATGAGTGTCACGGGTGAGCAGCGTCTGTTTATAACGGAGAGTGGGCGGCTGTGTGGCGTCATCACATGGAAAGAGatgaagaaaATAATCGAAGAGATGGCGAAGGAAGTCTGATGCACGGACCGTTAGCTCTGGCATCAGAACCACACAGCTAGCCATTTTGATAATCAGTTCATCTGCTGGTGATTTTGCTCAGATCATTATGTGGATAATTATTTAtagtgaaataataaataaatgatttgaacTGAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05017 CLCNKA; chloride channel Ka

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233174 lncRNA upstream 3996 13897831 ~ 13901092 (+) True G157459
TU233111 lncRNA upstream 22129 13801420 ~ 13882959 (+) True G157417
TU233118 lncRNA upstream 42882 13858965 ~ 13862206 (+) True G157423
TU233089 lncRNA upstream 409712 13493586 ~ 13495376 (+) True G157408
TU233085 lncRNA upstream 410611 13411670 ~ 13494477 (+) False G157408
TU233151 lncRNA downstream 26693 13938443 ~ 13939354 (+) True G157446
TU233186 lncRNA downstream 27656 13939406 ~ 13939898 (+) True G157471
TU233187 lncRNA downstream 28528 13940278 ~ 13940490 (+) True G157472
TU233188 lncRNA downstream 29116 13940866 ~ 13941487 (+) True G157473
TU233189 lncRNA downstream 30271 13942021 ~ 13942432 (+) True G157474
XM_043223991.1 mRNA upstream 73643 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 73643 13824967 ~ 13831445 (+) True LOC122328345
XM_043223986.1 mRNA upstream 80551 13804114 ~ 13824537 (+) False ttll10
XM_043223988.1 mRNA upstream 80551 13814221 ~ 13824537 (+) False ttll10
XM_043223987.1 mRNA upstream 80551 13814222 ~ 13824537 (+) True ttll10
XM_043224174.1 mRNA downstream 96470 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 133033 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 133033 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 133033 14044783 ~ 14050528 (+) False mlh3
XM_043225025.1 mRNA downstream 138941 14050691 ~ 14056567 (+) True kansl2
unassigned_transcript_2622 other upstream 2386552 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2389217 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2391242 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2392390 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2728055 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 142614 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 144935 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 387951 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 772240 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 800397 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile