RNA id: XR_006247796.1


Basic Information

Item Value
RNA id XR_006247796.1
length 184
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122328463
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 320273 ~ 320626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATCCACATGCCAGCTGCAAGGAATGAAGATGCTCGTCAAAGTTAAGTTCAGAAGTGAACAGAAGTATGTGAAAGTTTCTCACAGCGATTTGAAACTTTCCGATTTTCTGGATGAAGCCTTAGTGAAGTTCGGCATCAGTGTCTCTAGTAGGCCCGAGGCCCGTCTTTCTGACGAGTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227603 lncRNA downstream 43465 276168 ~ 276808 (-) True G153750
TU227602 lncRNA downstream 52092 267916 ~ 268181 (-) True G153749
TU227606 lncRNA upstream 41023 361649 ~ 363238 (-) False G153753
TU227608 lncRNA upstream 41023 361649 ~ 362606 (-) True G153753
TU227619 lncRNA upstream 255298 575924 ~ 584582 (-) False G153757
TU227621 lncRNA upstream 255298 575924 ~ 584582 (-) False G153757
TU227622 lncRNA upstream 255298 575924 ~ 584582 (-) False G153757
XM_043225342.1 mRNA downstream 9696 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 54241 258605 ~ 266032 (-) True LOC122329136
XM_043224276.1 mRNA upstream 459402 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 488298 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 488298 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 545089 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 562566 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other upstream 458459 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 699146 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 735386 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 1187072 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 1187184 1507810 ~ 1512291 (-) False smim29