RNA id: XR_006247797.1


Basic Information

Item Value
RNA id XR_006247797.1
length 3053
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122328476
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 960274 ~ 963577 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCCTTCAGGATAAAAGCGTATGCCTTGTTGCCGAGAGTGACACAAGACTGGCTTGCCATCCACACTAAATCAGATATAACCTGCAGCTATATGAAGATCTGTGTATGAGGTGTGTTTGAAACACTGTTCTGAGCCCAGTAAAACATCAAAGgtttttttctccattctgtcacggatGGAGTTTCGGTTCCTCGTCGTTGTCGCCTCCGGCTTGCTTATAAACTTCACAAGCAGCAACAATATATCTTCCTCATAATGGCATCTGCATCAGAAAGTGTTGGAATTCTCTCCTGGAATCTGAACGGTCTAAAAGCTAAACTTAAAAATGGAATTAGTAAAAAACCAAATGCTGAATATCTTCAATTCTAATGACGTTGTGCTTTTGCAAGAGACTAAAATTGGTAAACCGACcgaacgcaaaaaaaaaaagattgatagTGACCGGGAAACAATTGAAACGCATTTATCAGAACCTGAATGTAAACTCGAAAAACTGGAAGATGCTACATTCAAAGGGACAGAGACCAACCAGCCCAAGACAATGTACATGACGTACTTCAGTTCAAACAGCAAAGGTGTTGCCATTCTGATCAACAAACCACACAATCTGCTGACGGCGTTTTGTGAAGGTGGAGATTATGCTTGGGTTCATGTTGAGATTGACAATCAGAGGTACACTTTCGTGAGCGTGTATTACAGTGCTAATGAACCTCATCTCATCTGTAATGTCATGTTGAAGATTTTCTACAGCTTCTTAAAAGATGGGTCAGATATTTTACAAAGCAGGCTTGTGATCGGCGGAGACTTTAACACAACGCTTCATTCTGTATTGGATGCGAACAAAGTAATCAGAGGACATCGTGCGCGGAGAGCAAGACTGAATGAGTTCATGAATATACTGGAGCTATCAGATGTCTGGAGAGAAAAGAATAAGAATTGTcgtgaatacacacacacacatccaccgAAAACATCGACAAAGAAGCGTCAAAGCCCAACGATGTCTAGATTAGACTACGTTTTCATGTTGGAGAATGATGTGGATTATGTCAAAAACTGTAGCATACGCAAAGATATAGTTTTGTCTGATCATTTTCCTGTGAGCCTGactctaaacaaaacaaaattgccATCGTACCGTCCTCAGCATAGAGAAGAGTGATTGGAAAAGCACAggcatattcatatatttataaaaatgtgggTAGCGCTTTAGTTTACAGTAGGTGTACTTTCCTATTATGTGCATGGGTAATATCCTACGAGCAAATGAGTGATAACACAAGGTGCTTACCTGAAATGTATGTACATGGTAAAAATACAAGAAACACAGCTGTACTTTACAGTATTACATGCATGGAAATCAGTTTGTACATACAGACAATTGTGGGTAAGAATAGGCACTTACAGCTAGCGCCTGTACATAGGAACTAATTAAACAGTTACTTACTTAGTAAATATGTAACAAATGCGCACAAGTGGATACAAACAAGCATGTCCTTACAGTATCTGTACATAGTAACCAAGACACATTACCGCACCTATGGGAAAATGTGCTATTATGTCGCATACTGTACTTGCTATATATGTGATAAAAATGTAGTACTTACGGACAAGAGAGCTAATGATAAATTGCTCTCCTCAACAGTGCTTACTTAGTTTGAAGAGCTGGTTATTCCCgtgtaatgtttttgtagactggtgcactttattttacagtaacatTTCCTATTAGTTAATGTACGGAAGAAGTTATGAGGTGCTTGAGTAAACACGGACCAATGTACGTATCGAGCAATTGATGGTAGACAATAGCACAATAGCTACACATTTACCATGTACAAAACCATTAGTGTGTGCAGTAATGTGCCTTAGTTACCATATACAGATACTATAAGGACATGCCTGTTTGTAATTACTACATATTTACCAAGTATTTACTTTAGTAGGTAGAGTAAACTATCTCATTGGTTACCATCTACAGGCACTACCTGTAAGTGACCCTTCTTACCCACACAATTATTAAGATGCATGTATGACTGTTAAGTTCTGCGTTTCTATTCAttattgtgtatgttttttaatatcCTTGCTGTTTAATAGGTACTTCATCTTCAGCTCTTTAGTGTCGTATTACTTGTTTTTATCTATTGTGGTCATTGCCgtctaaatttatatttatattctttatcATTGTTGGTTGCTTTACTTATTGCTGTTTTGGTTTTAACTGTTTTCTCCTGTTTTGGGGCTCGGAAgggatttatatattatatttatatttgtcgTGTTTTGCGAATTTACTGATTATTTGTTattctttatgcaaaaatgttcaGTTGTTCCATGTATAATGAGAAACATATCACTTGGAAAAAGggttgctatttttttttctaatcccATCTTGATTTGTGTTCAACTTCAGCAGAATGATCAAATATTAAGTAGTTTTCCACAGTTTTCTGATCAAAAAGCCATGTGTTGTGTACGTATTGAATATGTAATACTTCAATTCTTCATCGTAATAAAGTTCAGACTAAAACTGACAACTTAATTTCCTTTTATTGGGATTGAGCAGATGAGTTATATTATACACAGATTATATTAAACAGAATTCAAGAGGGAAAGAGTCCTTAAGCTCGAAAGCATCAATCTTATCTGATATCTGGAAGATCTTACGGATTCAAAAAAGAGCTGAGCTCAAAGATCAGAAACATCACTTAGAGAATATATATGAACAGAAAGCTGAAGGTACCTTTAACAGATCTCATGGGAATTGGTTAAAGGAGAGTAAGCAATGGTTTCAATGTCTGTTAATAAGAAAGCTATAAAAACATCTAGAACTGGTGCCTGTTTAAGATTTTtccttaatatatttttatctgccctctctcttcttttttgtgAATTCTTTCTGTATGTGTCTTaagaatttttatattatgttgcTTTTTTCTCTTATCTATTAATCCATTCGTggtatgtatttaataatgttttgaacaCAGGCCTTCTGTTCTTTTGTATTGGTTTTGTAAGTACTGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227875 lncRNA downstream 60508 898180 ~ 899766 (-) False G153893
TU227921 lncRNA downstream 78090 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 78090 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 93527 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 115264 841719 ~ 845010 (-) True G153893
TU227992 lncRNA upstream 241902 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 241902 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 243123 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 425785 1389362 ~ 1393135 (-) True G153984
XR_006247811.1 lncRNA upstream 456280 1419857 ~ 1420454 (-) True LOC122328606
XM_043225488.1 mRNA downstream 1283 937362 ~ 958991 (-) False LOC122329272
XM_043225483.1 mRNA downstream 1297 905611 ~ 958977 (-) True LOC122329272
XM_043225487.1 mRNA downstream 16268 905611 ~ 944006 (-) False LOC122329272
XM_043225485.1 mRNA downstream 26010 905611 ~ 934264 (-) False LOC122329272
XM_043225486.1 mRNA downstream 34765 905611 ~ 925509 (-) False LOC122329272
XM_043225054.1 mRNA upstream 2097 965674 ~ 991444 (-) True nup210
XM_043224145.1 mRNA upstream 46326 1009903 ~ 1018911 (-) False LOC122328452
XM_043224144.1 mRNA upstream 46326 1009903 ~ 1018910 (-) True LOC122328452
XM_043224097.1 mRNA upstream 61080 1024657 ~ 1032351 (-) False ptpdc1b
XM_043224096.1 mRNA upstream 61080 1024657 ~ 1032351 (-) True ptpdc1b
XR_006247804.1 other downstream 174395 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 56195 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 92435 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 544121 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 544233 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 544233 1507810 ~ 1512329 (-) False smim29

Expression Profile