RNA id: XR_006247808.1


Basic Information

Item Value
RNA id XR_006247808.1
length 985
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122328559
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 583143 ~ 584491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttatgttgactTGTGTTTTAGGTATGTGTTAGCAGTTAGCTCTTCGTTTGTctcttttataatgttgtggACTAATcgtttgttatttcattttagcctgtcttttcctttgttttctgtcgatggccatgagtttaatgactgctgtttattcagGATTCTCCCTTTCGTCCTGGGCGATTAAATGCGCCGTTCCTGACGTTTTTTTCCTGTCGCGCCGTGAACTTTCGGTTACTCGGAAGTCTTAGTTGATACGGAGATCTATTACCCGCTACCTGCTTCCCGCTACCTGCTTCCCGCTACCTGCTACCTGCTATCTGCTAcctgctacctgctatctacTACTGATCCCTGTGATTGTGATTTGTGTTActggttattattgtttgttttgttttgtttaaagtggtTCTGCTTGAGGGCATCTATTTGATTATGGAGTAGCCGGTGCCCTGTGTGGATTTTGCTCCTCCATTGTGGAActacaaaaattgtattctttttctttccttttttataatttgtgtattttttgttttgttggacattttgtattgtttatattcaacattagtTTGCCTtggttgaatttgtttgttcgtttccCTTTCCTTTTCTTGTGACATTATTGCCTGGATTAGTGTGTAAGGTTTTGGTTTGTGTAATACACATTGcatatactcattttatttttatcttcttacAGGAGCTGGGGTTCCACGGGTGCAGGAGCTTGAGGTGGTGGTGTCACTTCATCATTTGCTGTGGacacgtttgtgtgtgcagtgagtgtgtcggggtgtgtgtgtgtgtgtggaggtgtaAGTGTGCTTTTGGCTAAATTCAGCACTGGTGATCACTCCCGTGGGTGACCTCAGCCCTTTACCATTGGAGAGTGCTGCCGGCAGTAGGTGATGAGGATtcaatgtgacttttaaatggtgaaacaattgtgaaaataaattttgtacttTCATGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247809.1 lncRNA downstream 6309 575989 ~ 576834 (-) True LOC122328560
TU227606 lncRNA downstream 219905 361649 ~ 363238 (-) False G153753
TU227608 lncRNA downstream 220537 361649 ~ 362606 (-) True G153753
XR_006247796.1 lncRNA downstream 262517 320273 ~ 320626 (-) True LOC122328463
TU227603 lncRNA downstream 306335 276168 ~ 276808 (-) True G153750
TU227643 lncRNA upstream 94543 679034 ~ 683111 (-) True G153760
TU227900 lncRNA upstream 186022 770513 ~ 776050 (-) True G153911
TU227876 lncRNA upstream 257228 841719 ~ 845010 (-) True G153893
TU227922 lncRNA upstream 280986 865477 ~ 866747 (-) False vgll4a
TU227921 lncRNA upstream 281320 865811 ~ 882184 (-) False vgll4a
XM_043225342.1 mRNA downstream 272566 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 317111 258605 ~ 266032 (-) True LOC122329136
XM_043224276.1 mRNA upstream 195537 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 224433 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 224433 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 281224 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 298701 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other upstream 194594 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 435281 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 471521 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 923207 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 923319 1507810 ~ 1512291 (-) False smim29

Expression Profile