RNA id: XR_006247812.1


Basic Information

Item Value
RNA id XR_006247812.1
length 1699
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122328608
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8698178 ~ 8700822 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCACCGCTGCTGAGACATATGTACGGAACACCTGTCGCATGTTTCTGGGCTCCATTGTTCCTCATgcgctgctgttgctgctgcgTCTCACACAACCTGTTCCCGGAACATCAACCCTCAGTACGAGTCAGATCCAGCCCCGattataTGCAGGATGCCAGCTGGCAGACAGATGGTGGTGGCTTTAcacgtttttatttaaagacacatCAGAAGGAAGAGGAGGGTGAGGCAAGCGAACAGCTGTAGCGAGTGGGACAGGACGGTATATGCTGGTCAAAGTGACGAGCAGCCTGCACAATGAGAGAAAAGAACGAAAAACAAACACTAGAAACTTTCCCCAAATGCACCAGAGAGCACTTGTACCCTAAATATGGCCCCGTGACTATATCACAATTAGAATTTTATGATCTATTGTTTTTACACATGTATTGAATTTGTTGTACGAAACGCTCTGTCTTTGGAGAACAGTAATAAGGACGTTAAAGCGCTGTCTTCCTCAGTCTGAGCGGCGCTGCTGGCGTTCTCCGTGTCATACCATAGACCTGGGGCCTCGTGCCCTTTAACGGCGTTAGTCTCAGCGGGAGGGGGGCTTATTAACCGCAGTCTCGTTAAACCTTTTCACTACAGCACAGCAGTGCTACCTACGACTAACTGCGCAAGCCATGAGATCTAGAAACACTGTGTGGAACATTTGcattgttataataattagaatttCTTTATTTCGACTCTTTACAAATCCTGCTATTTTacacacataaaatgtattcaagtgCACAGTATCTCCCAGGCAAACAGCTGCTTCAGTGTGAGTCCTGCGCCTTTGCACTTGAGACCAGAGAACAAACGGCCTGTGAGAGGGGCATGCCATATGCAAAATACATaagttcaattaaataaaacaaacaccaaaacaataGCAAACAAAGAGTTGTGGATGGTATTAAATTATGCAGATATCATCGTTATTGTGATCGCACATGATATACAGCTTTGAAAATGATGACTTTGTTGCGTAAAAGGTAGAAATACACTCCAATGTTCAGTGCTACAATAATGTGACTCGTATAGATTTAATTACCACTAATTCCTCTACTACTATGGGGAAACCAtggtaataacaataaaacctCACACTCACACGCTTACATACtgtcgcgcacacacacacatacaagcaaACTATACTGGTGTTAGTTcagttttgaactttttattctttatttctcctttttattttctttttaaaggaagCTTTTAATCAAAGagcatttttgttcatatatagtttttacagaagaaaatactatacaaccttttttttttttttcttcctgaaaCAATATTGTCGAAGATAACCATCTACACATTTAGTTGCCTATATTATGATCAAAGCCGTGTTTAggaaataattcataatttccTCGCCTCGCTTTTCCTTGTTTATATTCAATGGAGGccaagcaaacaaaaatcatttttctctctcttttttttttttttaatttggagcGAAGCACTGCAATAATTTCCTCTGTAtagaattcatttaaattacagtCATCATTAGTGTTACTCGTTAGACAAGCCAGGTTCTAGCATGCCTGTTTCATATTGAAATCATCCAATCTTGGAAGCgaagaaaaaacttttttttttttttttttttttttctttttttttcttaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230793 lncRNA upstream 7078 8690885 ~ 8691100 (+) True G155830
TU230792 lncRNA upstream 69113 8628793 ~ 8629065 (+) True G155829
TU230785 lncRNA upstream 72542 8624905 ~ 8625636 (+) True G155824
TU230784 lncRNA upstream 73389 8624130 ~ 8624789 (+) True G155823
TU230773 lncRNA upstream 81173 8613414 ~ 8617005 (+) True G155813
TU230817 lncRNA downstream 120616 8821438 ~ 8938375 (+) True G155850
TU230819 lncRNA downstream 200192 8901014 ~ 8937967 (+) False G155850
TU230818 lncRNA downstream 214535 8915357 ~ 8939706 (+) False G155850
TU230820 lncRNA downstream 228922 8929744 ~ 8931849 (+) True G155851
TU230841 lncRNA downstream 240209 8941031 ~ 9033098 (+) False lzic
XM_043224775.1 mRNA upstream 8345 8629204 ~ 8689833 (+) True pex14
XM_043225409.1 mRNA upstream 344268 8351800 ~ 8353910 (+) True LOC122329212
XM_043224457.1 mRNA upstream 356399 8334954 ~ 8341779 (+) True LOC122328648
XM_043224614.1 mRNA downstream 218897 8919719 ~ 8922523 (+) False tardbpa
XM_043224613.1 mRNA downstream 218898 8919720 ~ 8922523 (+) False tardbpa
XM_043224612.1 mRNA downstream 218899 8919721 ~ 8922523 (+) False tardbpa
XM_043224615.1 mRNA downstream 218901 8919723 ~ 8924271 (+) True tardbpa
XM_043224221.1 mRNA downstream 325663 9026485 ~ 9029201 (+) False lzic
TU230751 other upstream 209537 8488086 ~ 8488641 (+) True G155799
TU230667 other upstream 364802 8331741 ~ 8333376 (+) False LOC122328506
TU230347 other upstream 1393820 7299279 ~ 7304358 (+) False tcea2
TU230359 other upstream 1459259 7225994 ~ 7238919 (+) True G155561
TU230095 other upstream 2103443 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230843 other downstream 325686 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 420062 9120884 ~ 9122374 (+) False G155927
TU230934 other downstream 420062 9120884 ~ 9122393 (+) True G155927
TU231143 other downstream 1023396 9724218 ~ 9769620 (+) False G156081
TU231144 other downstream 1023396 9724218 ~ 9769620 (+) False G156081

Expression Profile