RNA id: XR_006247900.1


Basic Information

Item Value
RNA id XR_006247900.1
length 137
RNA type snoRNA
GC content 0.45
exon number 1
gene id LOC122329330
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14056685 ~ 14056821 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGCCCTGAATCAAGGCCCTCAGCTTGCTGTAGCTGTTGGTTTCAAACAGCGGCCGATAAAAAAGCCTTCTTACAGTCTGTTGACTTTCCCGGTGTTATCTACTGGGTAAAGTCTATTCAGTTCGAAGGAACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233198 lncRNA upstream 16486 13981975 ~ 14040199 (+) True G157481
TU233195 lncRNA upstream 101139 13955112 ~ 13955546 (+) True G157479
TU233192 lncRNA upstream 103213 13944085 ~ 13953472 (+) True G157476
TU233190 lncRNA upstream 112766 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 114253 13942021 ~ 13942432 (+) True G157474
TU233221 lncRNA downstream 28773 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 28773 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 30760 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA downstream 31131 14087952 ~ 14088519 (+) False G157494
TU233223 lncRNA downstream 37257 14094078 ~ 14094458 (+) False c1qtnf12
XM_043225025.1 mRNA upstream 118 14050691 ~ 14056567 (+) True kansl2
XM_043225021.1 mRNA upstream 6157 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA upstream 6157 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA upstream 6157 14044783 ~ 14050528 (+) False mlh3
XM_043224174.1 mRNA upstream 43806 14008220 ~ 14012879 (+) True szrd1
XM_043224783.1 mRNA downstream 1149 14057970 ~ 14085170 (+) False nckap5l
XM_043224787.1 mRNA downstream 1149 14057970 ~ 14085170 (+) False nckap5l
XM_043224786.1 mRNA downstream 1149 14057970 ~ 14085170 (+) False nckap5l
XM_043224785.1 mRNA downstream 12612 14069433 ~ 14085170 (+) True nckap5l
XM_043224790.1 mRNA downstream 37965 14094786 ~ 14126167 (+) True c1qtnf12
XR_006247901.1 other upstream 2185 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2538149 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2540814 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2542839 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2543987 11512625 ~ 11512698 (+) True trnan-guu_35
XR_006247782.1 other downstream 242880 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 627169 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 655326 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 679180 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 935529 14992350 ~ 14996145 (+) True G157656

Expression Profile