RNA id: XR_006247901.1


Basic Information

Item Value
RNA id XR_006247901.1
length 137
RNA type snoRNA
GC content 0.44
exon number 1
gene id LOC122329331
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14054364 ~ 14054500 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGCCCTGAATGAAGGCCCCCAGCTTGGCGTAGCTGTTGGTTTCAAGCAGCGGCTGATATAAAAGTCTTCTTATGGTCTGTTGACTTTCCTAGTGTTATCTAATGGGTAAAGTCGTTTCAGTTCAAAGAAACAGTT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233198 lncRNA upstream 14165 13981975 ~ 14040199 (+) True G157481
TU233195 lncRNA upstream 98818 13955112 ~ 13955546 (+) True G157479
TU233192 lncRNA upstream 100892 13944085 ~ 13953472 (+) True G157476
TU233190 lncRNA upstream 110445 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 111932 13942021 ~ 13942432 (+) True G157474
TU233221 lncRNA downstream 31094 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 31094 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 33081 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA downstream 33452 14087952 ~ 14088519 (+) False G157494
TU233223 lncRNA downstream 39578 14094078 ~ 14094458 (+) False c1qtnf12
XM_043225021.1 mRNA upstream 3836 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA upstream 3836 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA upstream 3836 14044783 ~ 14050528 (+) False mlh3
XM_043224174.1 mRNA upstream 41485 14008220 ~ 14012879 (+) True szrd1
XM_043225565.1 mRNA upstream 142614 13905088 ~ 13911750 (+) True clcnk
XM_043224783.1 mRNA downstream 3470 14057970 ~ 14085170 (+) False nckap5l
XM_043224787.1 mRNA downstream 3470 14057970 ~ 14085170 (+) False nckap5l
XM_043224786.1 mRNA downstream 3470 14057970 ~ 14085170 (+) False nckap5l
XM_043224785.1 mRNA downstream 14933 14069433 ~ 14085170 (+) True nckap5l
XM_043224790.1 mRNA downstream 40286 14094786 ~ 14126167 (+) True c1qtnf12
unassigned_transcript_2622 other upstream 2535828 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2538493 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2540518 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2541666 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2877331 11174421 ~ 11177033 (+) True G156586
XR_006247900.1 other downstream 2185 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 245201 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 629490 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 657647 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 681501 14736001 ~ 14749402 (+) False LOC122328907

Expression Profile