RNA id: XR_006247902.1


Basic Information

Item Value
RNA id XR_006247902.1
length 85
RNA type snoRNA
GC content 0.46
exon number 1
gene id LOC122329332
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9835395 ~ 9835479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGTCTATGATGATTACTTGGCTCCCTCTACTGAAGTCTCTGAGGATAACTGCCATCCGTTACCCAATTTCTGTCTGAGATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231169 lncRNA upstream 20086 9813217 ~ 9815309 (+) True G156098
TU231166 lncRNA upstream 27115 9802696 ~ 9808280 (+) True G156096
TU231142 lncRNA upstream 68290 9683746 ~ 9767105 (+) False G156081
TU231094 lncRNA upstream 195569 9622479 ~ 9639826 (+) True G156047
TU231076 lncRNA upstream 250815 9584169 ~ 9584580 (+) True G156034
TU231180 lncRNA downstream 45283 9880762 ~ 9973534 (+) True G156109
XR_006247821.1 lncRNA downstream 49566 9885045 ~ 9888379 (+) True LOC122328703
TU231179 lncRNA downstream 86662 9922141 ~ 9923225 (+) True G156108
TU231228 lncRNA downstream 158967 9994446 ~ 9994653 (+) True G156142
TU231264 lncRNA downstream 235301 10070780 ~ 10089755 (+) False plagx
XM_043224549.1 mRNA upstream 5205 9822809 ~ 9830190 (+) True sh3bgrl2
XM_043224538.1 mRNA upstream 74778 9758867 ~ 9760617 (+) True irak1bp1
XM_043224514.1 mRNA upstream 129711 9696640 ~ 9705684 (+) True tbx18
XM_043224522.1 mRNA upstream 175910 9649897 ~ 9659485 (+) True selenoi
XM_043224465.1 mRNA upstream 186926 9635094 ~ 9648469 (+) True si:ch211-197l9.2
XM_043224542.1 mRNA downstream 68744 9904223 ~ 9908862 (+) True tbpl1
XM_043224489.1 mRNA downstream 160318 9995797 ~ 10005646 (+) False myb
XM_043224488.1 mRNA downstream 160319 9995798 ~ 10005646 (+) True myb
XM_043224490.1 mRNA downstream 160327 9995806 ~ 10005646 (+) False myb
XM_043224536.1 mRNA downstream 202388 10037867 ~ 10041353 (+) True armc1l
XR_006247904.1 other upstream 225 9835096 ~ 9835170 (+) True LOC122329334
TU231143 other upstream 65775 9724218 ~ 9769620 (+) False G156081
TU231144 other upstream 65775 9724218 ~ 9769620 (+) False G156081
TU231145 other upstream 65775 9730763 ~ 9769620 (+) True G156081
TU230934 other upstream 713002 9120884 ~ 9122393 (+) True G155927
TU231564 other downstream 580192 10415671 ~ 10417898 (+) False LOC122328383
TU231621 other downstream 715618 10551097 ~ 10554720 (+) True LOC122329061
TU231625 other downstream 727865 10563344 ~ 10572246 (+) True G156399
TU231641 other downstream 863448 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 1066590 10902069 ~ 10902140 (+) True trnae-cuc_40

Expression Profile