RNA id: unassigned_transcript_2601



Basic Information


Item Value
RNA id unassigned_transcript_2601
length 72
RNA type tRNA
GC content 0.57
exon number 2
gene id trnai-uau_26
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8196856 ~ 8196947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCTCCAGTGGCGCAATCGGTCAGCGCAGTACTTATAATGCCGAGGTtgtgagttcgagcctcaccTGGAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230649 lncRNA downstream 19338 8176699 ~ 8177518 (-) True G155737
TU230585 lncRNA downstream 223531 7973103 ~ 7973325 (-) True G155698
TU230569 lncRNA downstream 360318 7834562 ~ 7836538 (-) True G155684
TU230697 lncRNA upstream 110332 8307279 ~ 8382607 (-) True G155759
TU230759 lncRNA upstream 329455 8526402 ~ 8532927 (-) True G155803
TU230786 lncRNA upstream 427979 8624926 ~ 8625642 (-) True G155825
TU230942 lncRNA upstream 431752 8628699 ~ 8629103 (-) True G155933
XR_006247890.1 lncRNA upstream 873437 9070384 ~ 9072944 (-) False LOC122329247
XM_043225560.1 mRNA downstream 211382 7978891 ~ 7985474 (-) True gata5
XM_043225407.1 mRNA downstream 241861 7932443 ~ 7954995 (-) True LOC122329207
XM_043224019.1 mRNA downstream 264752 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA downstream 264752 7922253 ~ 7932104 (-) True tm9sf4
XM_043225052.1 mRNA downstream 330469 7862203 ~ 7866387 (-) True LOC122328942
XM_043225269.1 mRNA upstream 357560 8554507 ~ 8557031 (-) True LOC122329065
XM_043224373.1 mRNA upstream 502878 8699825 ~ 8777258 (-) False casz1
XM_043224374.1 mRNA upstream 502878 8699825 ~ 8777258 (-) True casz1
XM_043224375.1 mRNA upstream 502878 8699825 ~ 8748315 (-) False casz1
XM_043224372.1 mRNA upstream 502878 8699825 ~ 8748315 (-) False casz1
unassigned_transcript_2600 other downstream 434 8196329 ~ 8196422 (-) True trnai-uau_25
unassigned_transcript_2599 other downstream 1353 8195410 ~ 8195503 (-) True trnai-uau_24
unassigned_transcript_2598 other downstream 1880 8194883 ~ 8194976 (-) True trnai-uau_23
unassigned_transcript_2597 other downstream 2180 8194583 ~ 8194676 (-) True trnai-uau_22
unassigned_transcript_2596 other downstream 2707 8194056 ~ 8194149 (-) True trnai-uau_21
unassigned_transcript_2602 other upstream 206 8197153 ~ 8197246 (-) True trnai-uau_27
unassigned_transcript_2603 other upstream 1651 8198598 ~ 8198691 (-) True trnai-uau_28
unassigned_transcript_2604 other upstream 1948 8198895 ~ 8198988 (-) True trnai-uau_29
unassigned_transcript_2605 other upstream 2248 8199195 ~ 8199288 (-) True trnai-uau_30
unassigned_transcript_2606 other upstream 2775 8199722 ~ 8199815 (-) True trnai-uau_31