RNA id: TU22955


Basic Information

Item Value
RNA id TU22955
length 1616
lncRNA type inter_gene
GC content 0.30
exon number 9
gene id LOC122330774
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 55175 ~ 299321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCTCCATCATTACAGGTTTATCATTGGTGACAGTTTATTGAGCAAAAGTGAGCTGTGGCTGTAAACTCagtatatatcaatatattctTTCATTCGTTCAGTTCAGGTGTTTCTCAGACTGTGGGGTTATTTCAAGAACTGCTGCACAGACCTGCTCTCGGCTGTAACGCGATGTCACGTGATGATGACGTGCGGCAAAAGCGGGAGGAGCTCGAAACCGCAAGTGAAAGTAAATCTGAACAGCAGCTCTGCGCCTCGCTTACCCCCAGCTCATCTGGGCTATACACGCTGCTGTTTCTTTTTAGATATCATATACCTTTATAAATATTGAAAGTAcggtttgcatgcattttatttttttcaagggCTTCTAGTAATGATCCTTTCAGTAAAGGTGGTGACAAGAGCTGAAACACTTCCTGAGATGTCGGCCACCAGCTGCAGTCCAGATGATCCAGAGTTTCGGATTCTCCTGATGGACAGAGACGCTTGTGGGAAAAACCTCATTAGGAATAAGCTCACTGGGAGAAAATTGATTTATGATCAATCTGTGGGAGAGAACACGGGTTGAAGACGGGGAATGTGACTAAACGTGCATTATGTACTCGTCTCCGGGACAGAGGAAAAGGAAGAAACACGGAAGCGTAGGAACATAGTAGAGCAAACGAGTGAAAGCGCATGCGCGTTAAACaaagttaaatatttcagttctcCTTACGTCACTGCACGGTGCAATATAAACGCTCGTTCAGGACTCAAACAGTCACATCAACCAGAGGACGACGACAATTGAGGTAAGAGGAGCAAACATGCAGAATGTAACAGAGTGGTGTGAAGAGATTAATACCCGGCGGGGTTCGTGTATAAGATTCTTCCTGTTTTATTGAATTACGTCAACAATCCTGACTGTGATCAGAGCTGGTATTCACagGACGGCCGTCTGGTAGCAGATCCATCAGATCCCCAGAAACTGATCTCTCCTGTTATTTCCGTCTCGTCTGATCGTCTCgtctcttctctctgtgtgaATGAACTTCGTCACGAGATCATCTGTCATTCTGATGGATTAAAACAAGAGACTATGTTCAGAGCGTTTAATGTCTCCGACAGCACATCGACTCGATCTCCAGAATCAGATCAGCTCTGGTGGATCTCTGTCCTGGTCGTCATTCTTCTTCTGGTTCTGATCGGTTTCTTGCTGCGGAAAAAGGTCCTCAGATGTCTTCGGGGCATCGGTCAGCGTGATGCTTCAGAAAACAGGGATCCTGAATCTGGGGTCCAGATGAAGCTCAGATCTGATCAATCTGATTCGCCGAATCACTCTGAATCTGAACAGATCAACGGTTCTATGTCCAGAGGATGATCTTCATCATCAGCCTCATCTTCATTGTGACCGATTTACTCAGATTCagactctttttttcctcatcctGAGCCTCTTAACTCTTCCATTATCTGCTcctgcatattaatattttatttatttttttgccctgTCTGTAATTCATCCCTGGCAATCCTGTTATTTATCTTGTAGCTTGAACCATTGTTTTGTACTTGGATTATGATATAAAGCACAGGGAATATGCATATATGATGTGCAAGTAATAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22936 lncRNA upstream 87667 10442 ~ 207777 (+) True G15459
TU22977 lncRNA downstream 19277 318598 ~ 351269 (+) True G15478
TU23066 lncRNA downstream 22034 321355 ~ 354219 (+) True G15520
TU23071 lncRNA downstream 52643 351964 ~ 353083 (+) True G15524
TU23075 lncRNA downstream 62598 361919 ~ 367951 (+) True G15527
TU23049 lncRNA downstream 122214 421535 ~ 422898 (+) True G15507
XM_043226555.1 mRNA upstream 2032 289442 ~ 293412 (+) True LOC122329895
XM_043229165.1 mRNA upstream 17212 266330 ~ 278232 (+) True LOC122331655
XM_043227068.1 mRNA upstream 27189 245228 ~ 268255 (+) True LOC122330203
XM_043226671.1 mRNA upstream 76330 215085 ~ 219114 (+) True LOC122329952
XM_043229099.1 mRNA upstream 219802 73722 ~ 75642 (+) False LOC122331567
XM_043229411.1 mRNA downstream 151150 450471 ~ 452874 (+) True LOC122331907
XM_043229536.1 mRNA downstream 270003 569324 ~ 571953 (+) True LOC122332242
XM_043226167.1 mRNA downstream 272617 571938 ~ 610361 (+) False LOC122329695
XM_043226164.1 mRNA downstream 272618 571939 ~ 610361 (+) True LOC122329695
XM_043227369.1 mRNA downstream 326043 625364 ~ 636239 (+) True LOC122330407
TU22968 other upstream 219810 73544 ~ 75634 (+) True LOC122331567
TU23138 other downstream 254377 553698 ~ 557081 (+) True G15563
TU23155 other downstream 326044 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 455110 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 706674 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 748682 1048003 ~ 1049260 (+) False LOC122330066

Expression Profile