RNA id: TU22965


Basic Information

Item Value
RNA id TU22965
length 937
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G15468
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 62702 ~ 67697 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGAAAGTGAAAGTAAATCTGAACAACAGCTGGCAGCTCGACCTCTAGGGAGATTTTCCGCGACGCTGTTTAATGCGCATGCCTTGCATGTTAGCTATCGTGGAATATGACAAATATGGGTTTTGTGGAAATTGTGCTTCGAGCTAGTTTACTTTTTCTTGAAACCACCTTCACTGGCTTTGATCAGATTCGGCGAAAATGGCGACGGGATCCGAAACACTTCCTGAAACCAGCAGCTCCAGAGATGATCCAGTGATCCGGGCTCTTCTGAGGGACAGAAGAAGGTCTGGGGAAGGCTGACAGAGGAGAGGGAAGAGGTTTAAAGGTCAAAGAAAAGAGAGGTTCGTGAGGAAGTCTCTCAGAAGCGGGTTGAGAAACTCAAAAGAAGTGTTTGGGGAACAGAGACACAGCTGGAACATTTCCACACCCGAACTGGAGCAAACATGGGTTTGACTGTCAGCTGAGAAAGTGGACTGGAATATCTGAAGTATAATCATGCAGATCAGCACAGTTTCCTTCGCAGTGAATGTGACCTGAATGCGAACGCTGTATAAAGAGGGTGTGGCTGGGGAGTTTGTTGCTCCTCCCACTGCAGAATCTCTCTGTGGATAAAAGTTCTGCTTGGAACCCTTGCTTACTCTGATCGAGGATCCGCTGGAAGCGCTGAATCATGGAGATGGTCAGTGTTTCGTGTTCAGAGGTTCAGACTCCAGCAGGTTTCCTGTATTTGATTCTTCCTGTTTTACTGAATCACACCAATAATCCTGACTGTGAACAGAGCTGGAAAACAGAGGTGAGTGTGTTTCTGACCttgagctacacacacacacacacacacacacacactctcacacatacacacaaacacactcactcacactcacacacacacacacacacacacacacacacacactcacacacacacacacac

Function

GO:

id name namespace
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248087.1 lncRNA upstream 4254 55286 ~ 58448 (+) False LOC122330774
XR_006248195.1 lncRNA upstream 23606 37899 ~ 39096 (+) False LOC122331513
TU22969 lncRNA downstream 5847 73544 ~ 309909 (+) False LOC122331567
TU22973 lncRNA downstream 9734 77431 ~ 346978 (+) True G15474
TU22976 lncRNA downstream 11494 79191 ~ 348398 (+) True G15477
TU22982 lncRNA downstream 30946 98643 ~ 351269 (+) False G15478
TU22985 lncRNA downstream 33191 100888 ~ 101948 (+) True G15479
XM_043229161.1 mRNA upstream 48546 7079 ~ 14156 (+) True LOC122331645
XM_043229099.1 mRNA downstream 6025 73722 ~ 75642 (+) False LOC122331567
XM_043226671.1 mRNA downstream 147388 215085 ~ 219114 (+) True LOC122329952
XM_043227068.1 mRNA downstream 177531 245228 ~ 268255 (+) True LOC122330203
XM_043229165.1 mRNA downstream 198633 266330 ~ 278232 (+) True LOC122331655
XM_043226555.1 mRNA downstream 221745 289442 ~ 293412 (+) True LOC122329895
TU22968 other downstream 5847 73544 ~ 75634 (+) True LOC122331567
TU22959 other downstream 230198 297895 ~ 299321 (+) False LOC122330774
TU23138 other downstream 486001 553698 ~ 557081 (+) True G15563
TU23155 other downstream 557668 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 686734 754431 ~ 768972 (+) False LOC122330463

Expression Profile