RNA id: TU22977


Basic Information

Item Value
RNA id TU22977
length 780
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G15478
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 98643 ~ 351269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatagatGAATATAGATCTGTCTATACAGAAGCTGCACACATTACACATACTTCAGTAATAGTGAGAGTTagatttattgtcattttttggcAGTGCAGAGAGATAAAGAAAATGCAGTTCTATTaagaaataacaacaataataataattgttggacatattcataaaataaatccttcgcacaatctgacatagctgcgcTTAAATTGAACTAGAAATTAAGCGCTGGGTGTCCGGTCacaggagaactgaccccaacctttttttctcaattctgtaagggatggggttttggttctttTCCTGACTTGTTTAGTTTGGACACTTGTCTCATAAAATCTCCTATATTCTCCTGTTTAATACTGTTCagtgttaaaagcgctatataaaaatgattgattgatttgagaCGCTCCTTCACTGTGAGCTCGAGACTCAAAGGACTCCATGTTATCTGGACGGCTGAAGCCGGTTTACAGTTAGAGTTAGTTATAAAAGCTATTACATGAATTTACGGCATTTAAACATCCTGTATATGTCTACAGCTATTTACAAATCCAAGCCAGCATATGAATAAGGAGACTGAGGTGTTCATCACAGTGAAGAGCTTGTCTCCGTCTGCAGGTTATGTTTGTGTAATCACTGAGTTCGGCTCGGTCTCCTCCGCCGCGTCGCTCCTGTGGTTCTCCTGGGTTTGTTTGTTCAGTAGAGGATTCATCTCGTGTGATTCTGCCGTGATCTGCTTCTGGTCTGATCCAGCGGCTGGAGCTTCATCGCAA

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22969 lncRNA upstream 8689 73544 ~ 309909 (+) False LOC122331567
TU22957 lncRNA upstream 19277 55175 ~ 299321 (+) True LOC122330774
TU22955 lncRNA upstream 19277 295444 ~ 299321 (+) False LOC122330774
TU22936 lncRNA upstream 110821 10442 ~ 207777 (+) True G15459
TU23071 lncRNA downstream 695 351964 ~ 353083 (+) True G15524
TU23075 lncRNA downstream 10650 361919 ~ 367951 (+) True G15527
TU23049 lncRNA downstream 70266 421535 ~ 422898 (+) True G15507
XR_006248088.1 lncRNA downstream 103497 454766 ~ 456666 (+) True LOC122330779
TU23100 lncRNA downstream 127170 478439 ~ 480300 (+) True G15546
XM_043226555.1 mRNA upstream 25186 289442 ~ 293412 (+) True LOC122329895
XM_043229165.1 mRNA upstream 40366 266330 ~ 278232 (+) True LOC122331655
XM_043227068.1 mRNA upstream 50343 245228 ~ 268255 (+) True LOC122330203
XM_043226671.1 mRNA upstream 99484 215085 ~ 219114 (+) True LOC122329952
XM_043229099.1 mRNA upstream 242956 73722 ~ 75642 (+) False LOC122331567
XM_043229411.1 mRNA downstream 99202 450471 ~ 452874 (+) True LOC122331907
XM_043229536.1 mRNA downstream 218055 569324 ~ 571953 (+) True LOC122332242
XM_043226167.1 mRNA downstream 220669 571938 ~ 610361 (+) False LOC122329695
XM_043226164.1 mRNA downstream 220670 571939 ~ 610361 (+) True LOC122329695
XM_043227369.1 mRNA downstream 274095 625364 ~ 636239 (+) True LOC122330407
TU22959 other upstream 19277 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 242964 73544 ~ 75634 (+) True LOC122331567
TU23138 other downstream 202429 553698 ~ 557081 (+) True G15563
TU23155 other downstream 274096 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 403162 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 654726 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 696734 1048003 ~ 1049260 (+) False LOC122330066

Expression Profile