RNA id: TU22985


Basic Information

Item Value
RNA id TU22985
length 1033
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G15479
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 100888 ~ 101948 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGAGTAAGTCTTGAGCGATATGAATATATTCatagatttaaaatatacttcgTACATTCATTACTAATCAGGTTCAGACAGATCTGGTTAATAGTTGAGTCCTGGTTTTCACAAAGTCACTATCTTCATAAATGATGtgttaaaaactaaatagtaataaaatcattcatttccTGAACGTAGCGCATcctaaagaaatgaaaatgaataagaGTCAAATAAGAGAGGAACTGAGCGTGTAATAAATGTTCAGGTTTTACTCACAGGGTTCAAACACCATTAAAACCAGGAGAATTAAAGTGAAGATGAACTCGGTGGAGAAGACTGAGATCCTCATGTCTCCCGTCAATCCTTCACCATTAACTGAGGAGGAAGACCCACAGAAACCATAAAGAGCTGGTTTTATTAACACTGAGCTCATTAAAAGTAGAGAGTTAGGTTGAGGGTGTTCGGGGAAAGTAGATGTTCTGACTTATATCTGAGTATTTTCAGGTGTTTTAAGGATAATGATGTaggtttaaaattattaaattatattatttctcaagattaaatattacaagaaaTGATCCACGCTACAAACCAGAAATagagaataatatatattataatatatataaactcagGTTATCCTGGTAGCCTTCAATAAAACCAAGTgtctaaaactattaaacatgattattatgtttctatatttttaattcacggtgacagaaatgaaatgaatattttccAATAAGACATTCTTACTTttcaataaagccattttttttcttttgagtcacattttgacatttaatcagTGAATTAGAAGAAAAAGACATTTGGGCTGTTACCAagagaatgaaaatgattgaaTGAACACTGAATCTGCATCTGAAGTGTTTTAGATGGATTTACAAACACATGAATAATCTTCTGAGATATCAGGCGTTAAGCGTTAAATATTGATGTTTGAAGTGATTGACATGAAATGAGAAGAATCTGATCTGAGATATGAACAGATTCTAATAGTGTAGAGTGTAAAGGTG

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22965 lncRNA upstream 33191 62702 ~ 67697 (+) True G15468
XR_006248087.1 lncRNA upstream 42440 55286 ~ 58448 (+) False LOC122330774
XR_006248195.1 lncRNA upstream 61792 37899 ~ 39096 (+) False LOC122331513
TU22955 lncRNA downstream 193496 295444 ~ 299321 (+) False LOC122330774
TU22977 lncRNA downstream 216650 318598 ~ 351269 (+) True G15478
TU23066 lncRNA downstream 219407 321355 ~ 354219 (+) True G15520
TU23071 lncRNA downstream 250016 351964 ~ 353083 (+) True G15524
TU23075 lncRNA downstream 259971 361919 ~ 367951 (+) True G15527
XM_043229099.1 mRNA upstream 25246 73722 ~ 75642 (+) False LOC122331567
XM_043229161.1 mRNA upstream 86732 7079 ~ 14156 (+) True LOC122331645
XM_043226671.1 mRNA downstream 113137 215085 ~ 219114 (+) True LOC122329952
XM_043227068.1 mRNA downstream 143280 245228 ~ 268255 (+) True LOC122330203
XM_043229165.1 mRNA downstream 164382 266330 ~ 278232 (+) True LOC122331655
XM_043226555.1 mRNA downstream 187494 289442 ~ 293412 (+) True LOC122329895
XM_043229411.1 mRNA downstream 348523 450471 ~ 452874 (+) True LOC122331907
TU22968 other upstream 25254 73544 ~ 75634 (+) True LOC122331567
TU22959 other downstream 195947 297895 ~ 299321 (+) False LOC122330774
TU23138 other downstream 451750 553698 ~ 557081 (+) True G15563
TU23155 other downstream 523417 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 652483 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 904047 1005995 ~ 1009303 (+) False LOC122330135

Expression Profile