RNA id: XR_006248078.1


Basic Information

Item Value
RNA id XR_006248078.1
length 2652
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC122330733
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 875247 ~ 890906 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcggTTTTTGATCTGTTTATTCGAACTGACTTCCTTTAGTATTCAGTGGAGCTGATTATGTGACTTATATGGtcaagttgtgttttgtttgtttttcttttgtgctttaattCTCTTGATTGGTTGTGTTGATGATTCTATTTCATTCTCAAGTGACAAGTTACTGACCTGCCTTCTTTGTCGTGACAGGGCCTGAGCACCGGGGCAGAGAATTTCTTTTAGGTGGTGGTATCTTCCTCACAGTGTGCAGTGGTCACCTCCCAGAGTGTGAGTGTGCCCGTGTGTCTACACAGTGAAGTGCAGTGAGTCACCAGCAAGTGGTGTGGTCTGTCTTCCCTAGTTTTGGTCTCTTGGTGGACACCAGTTTTCATTGAGACTCtgacaaacaagaaaacaagcTCTGgAATGATTAGGTagctgtcacggtgtggtttagcgtGAAGGAGCACTGGATGAGAATATAAGGTTAACGAGTTTAATCATACGCATATACAGAAGTACCTCGGGCAGGTAGACAGACAGGTAGATGATCTGtgggatccagagcccagccctgATGATCCAAGCTGGAGctgatggagggaggagccgtGGAGGaacggccatcgactccatgagGCCAAGCGACGGCGGAGGAGCAGGTGGTGAGGTGGTGAGACTGAGGTCATCCAgaggtgagggctccctctgctggcttggtctAACAGACATGATTTTGACATGGTGAAAATGGTGTTGTTTTACACTACCTTTAAGAAATTATATCTAAAGCATTCTATAGACCCTAAATAATCAACTAGAGTAAAAACACGTTTTTCGTGTATACTTTTAGCAAAAAGATTTACAGGTAAAAGGCTTTTATGAAGTGTATTACCAAATGAAACTTACGGAGTCCCTTTTGTGTAAAATTCTTGCTACACCAAGTCGGTCAaatcaagtcacctttattaatatagcacttttaacagaACAGGAGTAGCTTTACAGAAGTACAGCAGTGTGTCGGTGATGTAAACACTCACTTTTCAGTTAAAGGCTGTTTATTGAATTCAGGGCTTTTTTCCAGCATGAATTAACATGTGCTTCGTAAGGTTTGATTTATGTGCAAAACactttccacactgagagcagatgaaagacttcattaattaatacaaaagtTTCTGTGACGTAACTTTTAAAATTGCATCAAAATGATCCAAATTTGACAATTCTACTGTCTTCTGTTACATCGAAGGTTTTTTCACCTTTCGTTAGTAAGTTAATGaaaatgtagtgtttttattcatttcaggtTTGATGGAAGATAATGGGGAGAAAGAAAAATTGAGAGAATTTAAGGAAAATAAATCTCGTCAAAAGTGGAGAAAAACCCAAACAGAACGatttaaagaaaagaagggCCAAGAAATATTTGACCTGCACTTAATGTGGGAAGAGTTTGATGAACAAACACCACATTGAGCTTCTCAGTTCAGACTGGAGAGAAAGCGTTCACTTGTGATCATTGCGGGAAGATTTTCTCACTATCCTCAACCTCAGAttggaaataatatttcatgcgTGATGCCGGTGATGATGCTTCCTATGTCCGTTTTCGGGGAACCAGAGGTCAATTATTTCAGTCAATACCTCAGGCTTGACACCGAAATCTGTGTTCTGATTGGGTTCTAGTACATACCGGTTACTTTTCACGTTTCAATACCCGACCCTACCACACGAAGGGAAGTTCGTTCTTGTGCTGAGAGCgttgttttgaatttgttaaCCCTTGTGCACCCCTCATCTGAGAATCACACTTATGGTCTTTGTAGTACCTTTGTTGGAGACACTTTTTTGCTATGAATGGACTACAAAGCATTATTCGCCTTGGGTATTATTGGGAAACAAACATGCTGGAATGAGAGTGGAGAGGTGATCGCCGACTGCTGCTTGTTTAAGATGGTGATACTGTCCTCAGAACTCAAGATTGCTCAAGAAGggttaatatgtgtgtgtagaaaataattaaaatttctaTGTGTTTTACTTTGGCTAGGTGTAGGATACAATACtgatgattgtatttttaattacactacatttggttacactttattttgacagtccactttagatattctacttaccataagtaactttgtatctacatgtcaactaatccTGGTTAAGTTGACGTACTTGTCAATatgtcagtatgttgtatgtctATCCAAATAAACTGTTTGTATATACATGTCTGTATGTTGCGGCCTGACCTTTCATCACTTGCCAtctttaacaaaatgtattctttctTCAAGAAACAGGACTATCGTCTGACAGAAGGTAAGCGCAAACAATGGCTACCTAAAAGCGTGTTTTGATCTGGCTGTCTTGTCATCAGAAAAGCccaaaaaaggaataaaaccTGGCAGTGAACACGTTCCTAGATTTCATGAAGAGAACCGTATGGGCCGTCAATCCTCTAAAGTTTTAGGCGCTGGACACACCTTCATTCCATCACTCGTGTCTTCAAAGTATTACCGTGATGCTACTTTCTTCCTGTAactttacagtgttttttttcatgcctttttttgcacaattgATTTCAGCATCTGACGTGTTgttttatgggtcaaaattaaaCACGCCCTTGATGTAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23193 lncRNA upstream 22992 850016 ~ 852679 (+) True G15607
TU23191 lncRNA upstream 25962 847287 ~ 849709 (+) False LOC122330703
TU23192 lncRNA upstream 25962 847287 ~ 849709 (+) False LOC122330703
XR_006248067.1 lncRNA upstream 26372 847365 ~ 849299 (+) False LOC122330703
XR_006248066.1 lncRNA upstream 26372 847391 ~ 849299 (+) True LOC122330703
TU23486 lncRNA downstream 64601 955507 ~ 955804 (+) True G15803
TU23489 lncRNA downstream 68673 959579 ~ 960094 (+) True G15806
TU23542 lncRNA downstream 178783 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 178783 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 224489 1115395 ~ 1115671 (+) True G15882
XM_043226920.1 mRNA upstream 29226 844603 ~ 846445 (+) True LOC122330100
XM_043229640.1 mRNA upstream 83003 783410 ~ 792668 (+) True LOC122332312
XM_043227493.1 mRNA upstream 100137 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 100137 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 121958 743953 ~ 753713 (+) True LOC122330397
XM_043226983.1 mRNA downstream 115077 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 120405 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 126801 1017707 ~ 1019352 (+) True LOC122332569
XM_043229957.1 mRNA downstream 144346 1035252 ~ 1045858 (+) True LOC122332610
XM_043226875.1 mRNA downstream 156106 1047012 ~ 1051151 (+) True LOC122330066
XR_006248020.1 other upstream 106699 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 240062 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 318590 553698 ~ 557081 (+) True G15563
TU22959 other upstream 576350 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 800037 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 115089 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 157097 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 400063 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 499833 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 504941 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile