RNA id: XR_006248068.1


Basic Information

Item Value
RNA id XR_006248068.1
length 1380
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC122330711
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 695751 ~ 697709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttaaagcccAGTATCTAGCACCTGAAGAATATTTTGCTAAAGTGCTACCTATTTTCTATAATATACCTAGGTTTAATGTCCAGTacatgatattattttaatgctgcaTTGTGGCTGGGCAGGCTTGGATATATATCATTAAAAGTCTCTTCTTGTGTTCATCTGCATTGCTCTCTGAAGCAGGGTATTTTTTAGAAACAGAAAGGGACTTTCCACGTGACGTTTGAACATTTCCGGCTGTATGTGATGTCTGACACTGACTGACTCGAGAAAGGCTTCAAGACACTCATCTCTTCTTTCGCAGCATCACCACCAACAGACTGAAATCAAATCCTGTCGTGAACGTGTCTGTAAGAATCAGACAGGAGCCTCCTCTTCTGAAGATGAAACGAGAGCCGCTGCACAAATCTGTcgtaaaataatcaaataaacagcGTTTAAGTGAAGCAACATGAGTTTTGATCATTCCTCCACCATGTCCCAGCCTTTAGTAGAAGTTTGTCTTGAATGGATATCGTGGATGGATATCAGGCTCTGATCTATGATTATAACATCAGGGATATACTGGTTTGGAGAAACTTAACTGTGAATAAATAACAGCAGGATTCAGTGCTCACACAGTATGAATAACACTAACTTTGGAGATTATTCACGCACAGCTATATATTTTACTATCTAGTGTGTGACTGCCGCCTCATTCTGGATGGTTTCTGGACATGGATGCGGTCACGAGTCATCTTCACTCAGGGACAGGATTGAGACGAACTCCAGAAGCGAGGAGCTGTGTTTGACTGATTTATGTGGGATGTGTTGGAGAGACCTTAAAGTTGTCTTCTGTCTCTGGTTTACTCTGTTTCTGGTGTGTTTTCCTGATCGAGCTGAGTGGGCGTGGCAACACATGCTCGGCAGGAAGCGTTTCTGCGTCATGCTTTGATTTATCTGTTCTCTTTTTATTGATGTTACAGTATTGATCTGCTTAAacccttgtttttgtttgctaaaTTTAAATTTCTAAATCGTGTTGTAAGTCAGGAGTTGAAAAAAATGGCCTTATTACAGAAAGAGCGGGAAATTGTGAATTTAAGGGAGAGGTGTAGTAAAACTATCGAGGGCTTTAAAGATAAGgagttaaaatgatttgtgcACTGCTATAGATGATGATCTATTTTTCTCAACCTGCATTAAATATTagggtttatttattaaaattgttcaaTCAAGTAGCTTTAAAAGAATCTGAATTCTTTCTTAATGCCCATTTTATCAATTGAATAACCTAGAATATTTATAGCATACTTGATTGTCCCATATTAGTCAAAAAAATCTGCCACATGTTTGAAAcgtcattttataaaaactggGACgacaaaaattactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23164 lncRNA upstream 17656 677066 ~ 678095 (+) True G15586
TU23110 lncRNA upstream 173079 520750 ~ 522672 (+) True G15550
TU23100 lncRNA upstream 215451 478439 ~ 480300 (+) True G15546
XR_006248088.1 lncRNA upstream 239085 454766 ~ 456666 (+) True LOC122330779
TU23049 lncRNA upstream 272853 421535 ~ 422898 (+) True G15507
XR_006248084.1 lncRNA downstream 84425 781983 ~ 783076 (+) True LOC122330767
TU23167 lncRNA downstream 95692 793250 ~ 815066 (+) False LOC122330666
XR_006248050.1 lncRNA downstream 110751 808309 ~ 815075 (+) False LOC122330666
XR_006248049.1 lncRNA downstream 110806 808364 ~ 815075 (+) False LOC122330666
XR_006248048.1 lncRNA downstream 111085 808643 ~ 815075 (+) True LOC122330666
XM_043229559.1 mRNA upstream 56452 638828 ~ 639299 (+) True LOC122332267
XM_043227369.1 mRNA upstream 59512 625364 ~ 636239 (+) True LOC122330407
XM_043226167.1 mRNA upstream 85390 571938 ~ 610361 (+) False LOC122329695
XM_043226164.1 mRNA upstream 85390 571939 ~ 610361 (+) True LOC122329695
XM_043229536.1 mRNA upstream 123798 569324 ~ 571953 (+) True LOC122332242
XM_043226129.1 mRNA downstream 2157 699715 ~ 711401 (+) False LOC122329668
XM_043226120.1 mRNA downstream 3020 700578 ~ 711401 (+) False LOC122329668
XM_043226110.1 mRNA downstream 3198 700756 ~ 711401 (+) True LOC122329668
XM_043227358.1 mRNA downstream 46395 743953 ~ 753713 (+) True LOC122330397
XM_043227493.1 mRNA downstream 56872 754430 ~ 775534 (+) True LOC122330463
TU23155 other upstream 60142 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 138670 553698 ~ 557081 (+) True G15563
TU22959 other upstream 396430 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 620117 73544 ~ 75634 (+) True LOC122331567
XR_006248020.1 other downstream 56873 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 308437 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 350445 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 593411 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 693181 1390739 ~ 1392850 (+) True G15955

Expression Profile