RNA id: TU23100


Basic Information

Item Value
RNA id TU23100
length 1643
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G15546
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 478439 ~ 480300 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGACAAAATAAGTCCTTTATCCTCATTTAGGTTGATTTGATACATTCAATCAAGTAGTAAAAGACAGTCTTTGTCATTCTATGAATGCGAGGAACAAAAAGTGAAAGGGTCCAGAAGGAATCTCAGTCTGGTTCTTGTCTGCTGCATGTAAGAGGTCAATCTGAGGAAGTCTTCAGATTCACATGTGTTATTGGCCTCAAATTTGACACAATCTCCTTCCTGAGTTGGATTATTAGTATGTGTTCTTTTGTTGAAAGCTGTGAAAGAGTGGGTTAGATTTACTTCAGACTGGCACTGGGATCTGATGTATAATCATCATGTTGTCTCTGTGGAATTCAGCTCTTTGTGTTTgaacaatgttttgtttgaatCTTAAATCTGATCTGTTCAaagtttaaaggggtcatcggatGAAATATTCACTTTTACATGATGTTCGAACCCTCACCACCCTATGatgataaaaatccacccagtgttgttttttttagaatccTCATAAGTCAGGGgtctcaaactcagttcctggcgggccggagcctGACAACCCTGTCATAAGTCATAAACGCTTTCACAGATCAAGCTGCTCACAAATTCTTGGCTGTGTGTCCGATTGCTGACACTGGTACGAACTGCGGAACATATAAAACTAGCACATTTTGGCAAAGTCTAATTGCAATCAAAGTTTCCAAATCACTGCAGGGATGTGCATTTTTTGCAATTCAGTCATCAATAGGTTTCAAAAACGATTAACTAATTAGTCGATGGGGTGGGGCATGTGCGGAGGGCGGGGCATGGCTGTAATGGAGATATTTAAGActtatgaaaattaatataattttatcacATTAAAACATGTCTATGAACAGATGTTTACACATTAGATTatgatgttattaaaaaaaaataaaaaaataacctcaAGTGAAGCGGACTTCTTGCCAATATGCTGAAACCTGTTCTATGTCACATCCTATGATATTAAACCGATAACTTAGGTTTAATATGGGCAtctgatgacccctttaacatgCGATTCAAAAGGTATCgtttccacactgagagcaggcGAAAGGTTTTTATGAAGTGTGAGTTAGCAAATGAATTGTAAGTTGCCTTTTCCgtgtaaaactctttccacactgagagcaacAAAAAGACTTTATTCCAGCATGACTTAACATGTGCCTCTCGAGGCTTTCTTTCTGTGTAAAACATTTCCCACACTGAGCGCAGCCAAAAGACTTTATTCCAGCATGAATTAACATGTGGGTATTGAGGCTTCCTTTCTGTGTaaaactctttccgcactgagagcagctgaaaggctttTCCGAAGAGTGAGTTACCAAATGAATCTTAAGTTGTCCTTTCTgtgtgaaactctttccacattcAGAGCAGCTGAAAGCTTTTATTCCAGCATGAATTAACATGTGCTTATTGAGGCTTCCTTTCTGTGtaaaactcttcccacactgagagcaggTGAAAGACTTTATTTCAGCATGAACTAACATGTGATTCTTAAGGTTTTCTTTGCGTTTGAAAGTGtttccgcactgagagcagctgaaaggcctTTTGACGTCTGTTTTCTGAATGCTCCATCTCACTAGTGTTTCTCCAGTGTCTTCATG

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248088.1 lncRNA upstream 21773 454766 ~ 456666 (+) True LOC122330779
TU23049 lncRNA upstream 55541 421535 ~ 422898 (+) True G15507
TU23075 lncRNA upstream 110488 361919 ~ 367951 (+) True G15527
TU23066 lncRNA upstream 124220 321355 ~ 354219 (+) True G15520
TU23071 lncRNA upstream 125356 351964 ~ 353083 (+) True G15524
TU23110 lncRNA downstream 40450 520750 ~ 522672 (+) True G15550
TU23164 lncRNA downstream 196766 677066 ~ 678095 (+) True G15586
XR_006248068.1 lncRNA downstream 215451 695751 ~ 697558 (+) True LOC122330711
TU23041 lncRNA downstream 215697 695997 ~ 697709 (+) False LOC122330711
TU23045 lncRNA downstream 215697 695997 ~ 696831 (+) False LOC122330711
XM_043229411.1 mRNA upstream 25565 450471 ~ 452874 (+) True LOC122331907
XM_043226555.1 mRNA upstream 185027 289442 ~ 293412 (+) True LOC122329895
XM_043229165.1 mRNA upstream 200207 266330 ~ 278232 (+) True LOC122331655
XM_043227068.1 mRNA upstream 210184 245228 ~ 268255 (+) True LOC122330203
XM_043226671.1 mRNA upstream 259325 215085 ~ 219114 (+) True LOC122329952
XM_043229536.1 mRNA downstream 89024 569324 ~ 571953 (+) True LOC122332242
XM_043226167.1 mRNA downstream 91638 571938 ~ 610361 (+) False LOC122329695
XM_043226164.1 mRNA downstream 91639 571939 ~ 610361 (+) True LOC122329695
XM_043227369.1 mRNA downstream 145064 625364 ~ 636239 (+) True LOC122330407
XM_043229559.1 mRNA downstream 158528 638828 ~ 639299 (+) True LOC122332267
TU22959 other upstream 179118 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 402805 73544 ~ 75634 (+) True LOC122331567
TU23138 other downstream 73398 553698 ~ 557081 (+) True G15563
TU23155 other downstream 145065 625365 ~ 635609 (+) False LOC122330407
XR_006248020.1 other downstream 274131 754431 ~ 768972 (+) False LOC122330463
TU23504 other downstream 525695 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 567703 1048003 ~ 1049260 (+) False LOC122330066

Expression Profile