RNA id: TU23169


Basic Information

Item Value
RNA id TU23169
length 1247
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC122330666
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 793250 ~ 815075 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACTTCCCGTCACCCCATATAACCCGCTCACTCCATTACCTTAGTTGCTGATCTCAAGGTTGCACACACTACTCTGGTCAcctctctgtctgcctgcctgcctgcctactAACCCAAGAAATCTCCTGTATCATAAATTCTCCCAAAAGGAAAGacttttttcttgctttgttgAACTCTTGATTATTACCAGTTCTGAAATTCCTGTGTTGATCGTTTGACGGCAGTAAGCCGAACTCTGCCCTTCTGTTAATAAAACTTCAGTTTTGCTTGAAGCCTGAGTCTGTCTATTGACCAGAGTGTGACACATAATATGCTTCTTGACACAGACACTCTTGCTGACCAGAAACAAATCTTGAGACCACGATGGTACTGACGGTAAAGGTGGCTGTGCTGATTGTGGCCTTTTGGGGCTTGTAATCATCACCTCCCCTAAGGGAAAGAATAGAAGTATTCAGACTTGTTCTGTGAACGATTCAGAGGAGCGTCTCAGAGAAAAGGCCCAGAATGCGTTAGCTGACATTGGTTCTAATCGTGTACTGCATCCTTCTAAAAAGAGAGCGGCCCGAGGCCAGCATGTCTTTAACAACGGGCTCCTTGGGTTCCACCGCAGCGTTCTGCAGGAGCTGCTGAGAGATGTGGGGGGCTATGATGAACAGCTGGACAACCTGATGCAGGACCTTGTGATCCCTCTCAGAAATACTCAACAAACTGCAATTGAAACAATGGTGGCCTACttcagctCAAATGAGCACTACGTGGATTACAATGCTGATTTATATGGAGAGTTTGTGAAGGAGCTTCGAGATGCACTTGTGAGATACCTCAAGGCTGAGACATCTGAGAGCCAAAATGAGAGATATGAAATCTGGAAAAAGCGCCAGCGGTGCACTTCATTGCCACTCAAATGGTGAACCACGAGGTTTATGTGGACCCAATGGCCCGTGATCGCTGTCTGCAGGAACACCCAAGACCACAAGATGAGCAACTGTACAATCAGGTCAGAGATGCACTAAAGATTAGGTTCCAGGACATCCTGCAGGACTTTCGAAGAGTGTCCGACAAGATCCGTGTCTTTCGCAAGAGAAAGAACTGGAGCTGGGACAAATAGGGACATTACGTGAGTCTGCAGCAAAAACCTGTTCCAGGACCAGTCTTCCTTAAAGTACTTGAGTGCATCTTGTTTCATACTTTGAGTATAATTAAATCATGGTACTTCTAcatgagtaaaataaaattgaagaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248084.1 lncRNA upstream 28487 781983 ~ 783076 (+) True LOC122330767
TU23041 lncRNA upstream 113854 695997 ~ 697709 (+) False LOC122330711
XR_006248068.1 lncRNA upstream 114005 695751 ~ 697558 (+) True LOC122330711
TU23045 lncRNA upstream 114732 695997 ~ 696831 (+) False LOC122330711
TU23164 lncRNA upstream 133468 677066 ~ 678095 (+) True G15586
TU23172 lncRNA downstream 2423 817489 ~ 893665 (+) True G15592
TU23185 lncRNA downstream 17193 832259 ~ 837762 (+) True G15601
TU23191 lncRNA downstream 32221 847287 ~ 849709 (+) False LOC122330703
TU23192 lncRNA downstream 32221 847287 ~ 849709 (+) False LOC122330703
XR_006248067.1 lncRNA downstream 32299 847365 ~ 849299 (+) False LOC122330703
XM_043229640.1 mRNA upstream 18895 783410 ~ 792668 (+) True LOC122332312
XM_043227493.1 mRNA upstream 36029 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 36029 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 57850 743953 ~ 753713 (+) True LOC122330397
XM_043226110.1 mRNA upstream 100162 700756 ~ 711401 (+) True LOC122329668
XM_043226920.1 mRNA downstream 29537 844603 ~ 846445 (+) True LOC122330100
XM_043226983.1 mRNA downstream 190917 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 196245 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 202641 1017707 ~ 1019352 (+) True LOC122332569
XM_043229957.1 mRNA downstream 220186 1035252 ~ 1045858 (+) True LOC122332610
XR_006248020.1 other upstream 42591 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 175954 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 254482 553698 ~ 557081 (+) True G15563
TU22959 other upstream 512242 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 735929 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 190929 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 232937 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 475903 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 575673 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 580781 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile