RNA id: XM_043226983.1


Basic Information

Item Value
RNA id XM_043226983.1
length 1368
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122330135
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1005983 ~ 1009431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCTCGTGATGCTGGTTTGAAGTAAACAGGAATATCTGGAGGAGAATCATCTGAACTGATCTTCTGCTGTGAAGATgatgtttattaaagaggagagtgaggaGGACACGAGTGAACCAGAaacatggagaataaaacacGAGGAACAGGGAGGCCTCATGAAAGTGAAAGAAGAAGGACAAGATCTGAACGAGGTGGAGGAGGAACATCAGGATGTCAGTGGAGAAACTACTGAGGTCAAAaggcctttcagctgctctcggTGTGGAAAGGTGTACAAACATAAAAGAAGCCTTAATAAACACATGAGAATTCATAGCGAGGAAAAGCCATTCGtctgctctcagtgcggaaaCACGTTCAAGCGTAGAGGAGGCTTCATGAAACACATGAGAATTCATGGCGAGAAAAGGCCATTCGtctgctctcagtgcggaaaAGCTTTCACGTGTAACAAAAACCTTAAAGATCACTTGTTAATTCACGCCGGGATAaaacctttcagctgctctgagTGCGGGAAGAGATTTACGCAAAAAGTGCATCTTGAGAATCATCTGGTAACTCACTCTTCAGAGaagcctttcagctgctctcggTGCGGAAGCACTTTCACTCGTAAAGCGAGCTTTCATCAGCACATGTTAATTCATAATGAAATAAAGCCTTTCGGCTGCTCTCAGTGTGAAAAGAGTTTCACGCAGAAAGTACACCTTGACAATCATTTAGTGACACACTCCTCAGAaaagcctttcagctgctctcagtgcgggaagagtttcacaCGCAAAGCTAGTCTTGAGAAGCACGTGTTGATTCACGCCGGGATAAAGCCCTTCAGCTGCTCggagtgtgggaagagtttcgtATGTAAAGAAATCCTGAGGAATCACATGGTAGTTCATACTGGGATAaaacctttcagctgctctcagtgtggaaagactTTCACGCAGAAAGGACACCTTAAGGATCATCTGGTAACTCACTCTTCGGAAAACCCTTTCACTTGCtctcagtgcgggaagagtttcacgTGTAAAGGATACCTTAAGACtcacatgttaattcatgcTGAAATAAAGCCTTTTAcctgctctcagtgtgggaAGGGTTTCATATGCAGAGGAAACCTGAGGAATCACATGGTAGTTCATACCGGGAACaggcctttcagctgctctgacTGTGGAAAGAGCTTTACACAGAAAGGACACCTTAAAGTTCATGCtgccaaaacacatttatttttagacaagTGATTTCTTTCCTCTGACGACTGAAACTTGCGCACCGTGTAGGGCTGGATGTTGTTAAAGGTGACCTATTTCAtggtaaacatttaatataaaataccaTCGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23489 lncRNA upstream 45889 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 50179 955507 ~ 955804 (+) True G15803
TU23172 lncRNA upstream 112318 817489 ~ 893665 (+) True G15592
XR_006248076.1 lncRNA upstream 115077 875671 ~ 890906 (+) True LOC122330733
XR_006248077.1 lncRNA upstream 115077 875671 ~ 890906 (+) False LOC122330733
TU23542 lncRNA downstream 60258 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 60258 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 105964 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 107792 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 111209 1120640 ~ 1133792 (+) True G15886
XM_043226920.1 mRNA upstream 159538 844603 ~ 846445 (+) True LOC122330100
XM_043229640.1 mRNA upstream 213315 783410 ~ 792668 (+) True LOC122332312
XM_043227493.1 mRNA upstream 230449 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 230449 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 252270 743953 ~ 753713 (+) True LOC122330397
XM_043227127.1 mRNA downstream 1880 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 8276 1017707 ~ 1019352 (+) True LOC122332569
XM_043229957.1 mRNA downstream 25821 1035252 ~ 1045858 (+) True LOC122332610
XM_043226875.1 mRNA downstream 37581 1047012 ~ 1051151 (+) True LOC122330066
XM_043227149.1 mRNA downstream 52845 1062276 ~ 1064324 (+) True LOC122330262
XR_006248020.1 other upstream 237011 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 370374 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 448902 553698 ~ 557081 (+) True G15563
TU22959 other upstream 706662 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 930349 73544 ~ 75634 (+) True LOC122331567
TU23529 other downstream 38572 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 281538 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 381308 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 386416 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 549956 1559387 ~ 1649494 (+) False G16003

Expression Profile