RNA id: XM_043226875.1


Basic Information

Item Value
RNA id XM_043226875.1
length 3640
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC122330066
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1047012 ~ 1051151 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtaCGGCCAATCCATATGTTTTgtgaaatgatgatgatgatgatttctgGTTGCGGACAATTAAAATGTCTCCACAATTTACTTTTGAGGAAATATCATAGCATCATGCTACAGCACACATTCTGTAAGCTGCAGTTCTGAGGTCTCAGTGAAATGCAACACACAGTCATGGCCataaatattggcacccttggtaaacatgatcaaagaaggctttaaaaatgtatctgcaTTGTAAAtccttttaaacttttatttacaaaaaaaattcatttaattggATTGGACAAgaaaaatactgtatgtttgatacatacatcaattttttttctctgccaaGATGAGGCGCTTTAAAGCGAGAGAAAAAGcaggacacttttttttattttaatatgagcTCGTATTTAAGGCTTTTGAAAAATCGTGTCGCCgcacataaataaaagtatgtaaaaCACATCCTACCCGACACTAACTTCATTACACATCACTAAAACCTCAACTGCgtttgtaaacaaacacaaagcgGAAGTTAGCTTAGGGCCGGGTGCGTGCGCTCGAAGAAACCgcaattattaaatgttacctttttattaatatattatcttTACTTTTTACGTTTTATCAACAACTTTCATGGTCTGCTGATTGTATTTGCATTAGGGAGAAAAGTAGTTTTACTATTATACTTTTAATCTCTAAATTTCATCAGTATAAGTAAATTTTCCACCAcatatgttttgattttttttatatatatccaATTTAATTGCGATAGAGTAATCAGGTCATcagcattttacagtttttttgctcttattgttattaataattattattataatatcaagGCTAACTCTTATCATTGTCACGTGCTTAATTTCTATATGCTGCAATGTTAGGTGATTTCATTGAAATGTTACGGTAAAAATTCTAATCCTCACACGCGAAAACTCACGCTTAAAAtcggctttaaaaaaaatcccattctctcttctcttcagtCTCCAGTCCAGCGGGTGGCGCGAAAACACGCGTTTGTTTGTCAAACACCATTAAACCTCAGAGGAAGAAGAAGTTTAGTTTCACCGCGATCTCTGTGGTTTTGTCCAGATGCTGCTTTAACGCAAAGtcaaagaaatgtttctgtaaatacagaaatacaaattTCGAATCTGTTTCATGCATATAATATTCTCATCCTCAAAGTCGTGACTAAGTTTTGAAGAAAACAGAGATCTGCTGCTGTGAAGATGATGTTTGTTAAAGAAGAGAGTGAGGAGAACATGATTGAACCAGAaacatggagaataaaacacgaggaaccagaaacatggaaaataaaacacgaggaaccagaaacatggaaaataaaacacgAGGAACCAGAAGCCTGGAGAATAAAACACGAGAAACAAGGAGacCTGATGAATGTGAAGGACGAAAGACAAGATCTGAATGAATTGGAGAAACCTCAGGATCAAAAAGATCATAATGTAAATGAACAAAGCAGCACTGAAGTCAGAaaacctttcagctgctctcagtgtggaaaagCTTTCACGTGTAAGAAAAGCCTGAGGAATCACATGTTAATTCACGCCGGGATAAAGCCTTTTacctgctctcagtgtggaaagagttttaccAGGAAAAGTCAACTTAAGGATCACATGCATATCCACTCTTCAGAAaaacctttcagctgctctcagtgcggaaagagtttcacGCGTAAAACAAACCTTAAGACTCACATGTTAATTCATTCTGGGATaaagcctttcagctgctctgagTGCGGAAGGAGTTTTACAAAGAAAGAACACCTTAAGAATCATTCGGCTACTCACTCTTTAGAaaagcctttcagctgctctcagtgcggaaagTCTTTTGTGAGTAAAGAAAGCTTTAAGATTCACACGTTAGTTCATGCTGGAATaaagcctttcagctgctctgagTGTGGAAAGACTTTTACGAAGAAAAGACAACTTACAGATCATCTGGTAACTCACTCTTCAGAAAAACCTTTCGtctgctctcagtgcggaaagTCTTTCACTTGTAAAACAAACCTTATGACTCACATGTTAATTCACGCCGGGATAAAGCCTTTTACCTGCTCtgagtgcgggaagagttttaTCAGGAAAAGTCAACTTAAGGATCACATGCATATCCACTCTTCAGAAaaacctttcagctgctctcagtgcggaaagagtttcatACGTAAACCAAACCTTAAGACTCACATGTTAATTCACGATGGAATaaagcctttcagctgctctaACTGCGGAAAGAGTTTTACAAAGAAAGAATACCTTAAGAAGCATTTGGCTACTCACTCTTTAGAaaagcctttcagctgctctcagtgcggaagGAGCTTTACAAAGAAAAGTCAACTTACAGATCATCTGGTAACTCACTCTTCAGAAAAACCTTTCGtctgctctcagtgcggaaagTCTTTCACTCGTAAATCAAACCTTAAGAATCACATGTTAATTCACGCCGGGATAAAGCCTTTTACCTGCTCtgagtgtgggaagagttttaCCAGGAAAAGTCAACTTAAGGATCACATGCATATCCACCcttcagctgctctcagtgaGGAAAGTCTTTCAAACATAAAGAAAGCCTCAAGACTCCAATGTTAATTCATGCCGGGATAAAGTCCTTTCAACTGCTCTCAATGTGGAAGGACACCTTAAGGGCCATTTGCTAACTCACTCTTCGGAAAAGCCTTTTCACCTGTCAGTGCGGAAAGTTTTTCCCACGTAAAACAAACCTTAAGACTCACATGTTAATTTATGCTGGGATaaagcctttcagctgctctgagTGCGGAAAGACTTTTACACAGAAAGTGCAACTTGAGAGTCACTTGGTAAGTCACTCTTCAGAAAAGAGTTTCATCTGCTCTCAGTGCAGAAAGTCTTTTAGCTACGAAGGAAGCCTTACGACACACTTGAGAATTCACAGTGGGCACAACGGATAGTAACCCTAGAtcttaacaataaattaaagcaaagaTGACCGCTAGAACTGAGAACTCCATCGAGAATATTCCATCTCAGAGATGATATCAGTCACTCGGTATGTACGTTGAATGAAGgtaaaatcttttaatattcatgaacttCCAGAGAAAGCTCGCCCCACACGCTGCGTCTGGTGTGGACACCCAAACTGCTTGCAAGCGCTTGAATTGTCGCATTGCGTGTAGTAAGGACATAACGTTAtggctgttttctgttttccttcACATGTAATGGAAACCTTAAAAATCACATTGTAGTTCATACTGGACTAAAGCCTTTGATGCAAACCTCGGGAGCTTGGCAGAAAGGTCTTGGTGTACAGAGAGAAGAGCAGCGCTGAGAGAACATAACCCTGAGGTGCACCGGTGCAGATCGGTCAGAAAGCTATGAACAGAGAGCTAGGCTAGCTCAGTATGTAGGAGTGTTGGGATGATTGTGTTGAAAGCagtatttttgtggttttttttgctatttggATCTAAACTTTTTCTTGCTCAACTTCTCTGAACGATTAGTTTCATGTTCTGTTTACATGTAACACACTgctacacaaataaatgtactgtttaaATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23489 lncRNA upstream 86918 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 91208 955507 ~ 955804 (+) True G15803
XR_006248077.1 lncRNA upstream 156106 875671 ~ 890906 (+) False LOC122330733
TU23542 lncRNA downstream 18538 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 18538 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 64244 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 66072 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 69489 1120640 ~ 1133792 (+) True G15886
XM_043229957.1 mRNA upstream 1154 1035252 ~ 1045858 (+) True LOC122332610
XM_043229905.1 mRNA upstream 27660 1017707 ~ 1019352 (+) True LOC122332569
XM_043227127.1 mRNA upstream 33369 1011311 ~ 1013643 (+) True LOC122330251
XM_043226983.1 mRNA upstream 37581 1005983 ~ 1009431 (+) True LOC122330135
XM_043226920.1 mRNA upstream 200567 844603 ~ 846445 (+) True LOC122330100
XM_043227149.1 mRNA downstream 11125 1062276 ~ 1064324 (+) True LOC122330262
XM_043226788.1 mRNA downstream 27782 1078933 ~ 1084889 (+) True LOC122330011
XM_043226794.1 mRNA downstream 28633 1079784 ~ 1084889 (+) False LOC122330011
XM_043226802.1 mRNA downstream 28664 1079815 ~ 1084889 (+) False LOC122330011
XM_043226728.1 mRNA downstream 34138 1085289 ~ 1089633 (+) True LOC122329984
TU23504 other upstream 37709 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 278040 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 411403 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 489931 553698 ~ 557081 (+) True G15563
TU22959 other upstream 747691 297895 ~ 299321 (+) False LOC122330774
TU23688 other downstream 239818 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 339588 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 344696 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 508236 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 564557 1615708 ~ 1646532 (+) False G16003

Expression Profile