RNA id: TU23616


Basic Information

Item Value
RNA id TU23616
length 277
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G15882
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1115395 ~ 1115671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttatgtagattttcttaaggaatttgctgattttatttcagacttaataattaataaagacagagcacttattatcggtgatttcaacattcatgttgacgacccaaataatacagtaggagctactttcacaaatttattaacatcttttgggctaaagcaaaatgtaatcggcccaactcactgctgtaagcatacattagatttaattatttcgcatggcatcgatgttttagacctagatatcttacctctaagtgatgatatcactgatca

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23542 lncRNA upstream 45257 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA upstream 45257 1069689 ~ 1070138 (+) False G15833
TU23489 lncRNA upstream 155301 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 159591 955507 ~ 955804 (+) True G15803
XR_006248077.1 lncRNA upstream 224489 875671 ~ 890906 (+) False LOC122330733
TU23617 lncRNA downstream 1552 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 4969 1120640 ~ 1133792 (+) True G15886
TU23624 lncRNA downstream 5669 1121340 ~ 1123300 (+) True G15889
TU23622 lncRNA downstream 14221 1129892 ~ 1131475 (+) True G15887
TU23652 lncRNA downstream 37154 1152825 ~ 1153228 (+) True G15911
XM_043227606.1 mRNA upstream 10216 1102861 ~ 1105179 (+) True LOC122330518
XM_043227045.1 mRNA upstream 13295 1090492 ~ 1102100 (+) True LOC122330159
XM_043227036.1 mRNA upstream 13295 1098999 ~ 1102100 (+) False LOC122330159
XM_043227029.1 mRNA upstream 13295 1099048 ~ 1102100 (+) False LOC122330159
XM_043227025.1 mRNA upstream 20489 1090820 ~ 1094906 (+) False LOC122330159
XM_043227078.1 mRNA downstream 38952 1154623 ~ 1157439 (+) True LOC122330224
XM_043227097.1 mRNA downstream 38952 1154623 ~ 1157439 (+) False LOC122330224
XM_043227087.1 mRNA downstream 38952 1154623 ~ 1157439 (+) False LOC122330224
XM_043227104.1 mRNA downstream 38952 1154623 ~ 1157439 (+) False LOC122330224
XM_043226462.1 mRNA downstream 44566 1160237 ~ 1176071 (+) True LOC122329844
TU23529 other upstream 66135 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 106092 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 346423 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 479786 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 558314 553698 ~ 557081 (+) True G15563
TU23688 other downstream 175298 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 275068 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 280176 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 443716 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 500037 1615708 ~ 1646532 (+) False G16003

Expression Profile