RNA id: TU23622


Basic Information

Item Value
RNA id TU23622
length 750
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G15887
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1129892 ~ 1131475 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgtcgtctctctctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtctcacgtCGTCTCTCTCGGTGCGGTACGGATTGACGAAGTCTGCAGATTTCTCGGTGATGCCCAGCTCCTGAGACATCTGCATCAGAAGCACAGAGCGTTAGAGCCGgagcgtgagtgtgtgtagtgtgaaGTTACTCCCATGATGCCCTGCTCTGACCAGCGTGAGCACGTGCTGATGGGCTCCTCCGCTGAAGACGCCCGTCTGGTTGCAGAAGCGCAGGCCCCAGCGCAGCAGGCGGCTCCAGTCCACGTCCCGGTCGTAGTAGTGATGGACGATGCGCGGGAAGCGTAGAGCCACGTCTCCGAAGAAGGCCGTGTTCTCCACCACGTGAGAGTACGCTACAGACGGAGACACAACCTCTTCACACAGGTCCACTACAACACACCCGCTCTGGAGACTaacaggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctccatGTGCCAGAAATAgtggcttttatttatttattttcttataccCCAAAAACCTCTGAACAGGTATACAAGCATCCACCCCTTCATAATTACCAGTTCAATTCACAGTTTACaagtacataataataataataataatcaaaaataaaaaaaattaataaaataaaa

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23624 lncRNA upstream 6592 1121340 ~ 1123300 (+) True G15889
TU23617 lncRNA upstream 12226 1117223 ~ 1117666 (+) True G15883
TU23616 lncRNA upstream 14221 1115395 ~ 1115671 (+) True G15882
TU23542 lncRNA upstream 59754 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA upstream 59754 1069689 ~ 1070138 (+) False G15833
TU23652 lncRNA downstream 21350 1152825 ~ 1153228 (+) True G15911
TU23669 lncRNA downstream 81850 1213325 ~ 1213628 (+) True G15925
TU23671 lncRNA downstream 83841 1215316 ~ 1215605 (+) True G15927
TU23674 lncRNA downstream 108871 1240346 ~ 1241047 (+) True G15929
XR_006248071.1 lncRNA downstream 147788 1279263 ~ 1281171 (+) True LOC122330723
XM_043227606.1 mRNA upstream 24713 1102861 ~ 1105179 (+) True LOC122330518
XM_043227045.1 mRNA upstream 27792 1090492 ~ 1102100 (+) True LOC122330159
XM_043227078.1 mRNA downstream 23148 1154623 ~ 1157439 (+) True LOC122330224
XM_043227097.1 mRNA downstream 23148 1154623 ~ 1157439 (+) False LOC122330224
XM_043227087.1 mRNA downstream 23148 1154623 ~ 1157439 (+) False LOC122330224
XM_043227104.1 mRNA downstream 23148 1154623 ~ 1157439 (+) False LOC122330224
XM_043226462.1 mRNA downstream 28762 1160237 ~ 1176071 (+) True LOC122329844
TU23529 other upstream 80632 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 120589 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 360920 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 494283 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 572811 553698 ~ 557081 (+) True G15563
TU23688 other downstream 159494 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 259264 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 264372 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 427912 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 484233 1615708 ~ 1646532 (+) False G16003

Expression Profile